iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cre-022567

Ensembl Protein ID

EDO98280

UniProt Accession

P0CH10; P14624; P14695; RL403_CHLRE

Genbank Protein ID

CAA43216.1

Protein Name

Ubiquitin-60S ribosomal protein L40; Ubiquitin; 60S ribosomal protein L40; CEP52

Genbank Nucleotide ID

X60826

Gene Name

UBI1; UBI3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CHLREDRAFT_195594	EDO98280	EDO98280

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/NEDD8	7.80e-42	141.0	1	76
ULD/UDP/UBQ/UBQ_PIM	5.60e-29	99.5	1	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           m+i+vktLtgk+i++e+e+sdtie++k+++++keGiPP+qqrli+aGkqled++t+adyn++k+s+LhLvL+LrGG
   Q: 1    MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
           89*************************************************************************9 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+++dt+e++K+ki+++ g+pp+qq+LI+aGk+L+D +tL +++i+++s++hlv++ 
   Q: 1    MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
           99********************************************************************986 PP

Organism

Chlamydomonas reinhardtii

Functional Description
(View)

Ribosomal protein L40 is part of the 60S ribosomal subunit.

Protein Sequence
(Fasta)

MQIFVKTLTG KTITLEVESS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN 60
IQKESTLHLV LRLRGGIIEP SLQALARKYN QEKMICRKCY ARLHPRAKNC RKKSCGHTNQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGGAAGCGGG CAGCCATGCA AATCTTCGTG AAGACCCTCA CGGGTAAGAC CATCACCCTC 60
GAGGTGGAGT CTTCGGACAC CATCGAGAAT GTGAAGGCCA AGATTCAGGA CAAGGAGGGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0963--Cytoplasm
KW-0903--Direct protein sequencing
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein
KW-0832--Ubl conjugation

Interpro

IPR001975--Ribosomal_L40e
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF01020--Ribosomal_L40e
PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM01377--Ribosomal_L40e
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0005840--C:ribosome
GO:0003735--F:structural constituent of ribosome
GO:0006412--P:translation

KEGG

cre:CHLREDRAFT_195594

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001006	Aegilops tauschii	60.26	5.00e-46	174.00
IUUC-Aml-001246	Ailuropoda melanoleuca	91.41	4.00e-66	241.00
IUUC-Atr-003081	Amborella trichopoda	74.42	3.00e-47	178.00
IUUC-Apl-004069	Anas platyrhynchos	89.16	3.00e-40	154.00
IUUC-Ath-007098	Arabidopsis thaliana	93.75	7.00e-69	250.00
IUUC-Ago-007932	Ashbya gossypii	91.41	3.00e-66	241.00
IUUC-Acl-008350	Aspergillus clavatus	85.71	1.00e-62	229.00
IUUC-Afl-008554	Aspergillus flavus	92.19	1.00e-66	243.00
IUUC-Afu-008984	Aspergillus fumigatus	90.62	4.00e-65	238.00
IUUC-Ang-009609	Aspergillus niger	91.41	9.00e-66	239.00
IUUC-Aor-009991	Aspergillus oryzae	90.55	2.00e-64	235.00
IUUC-Ate-010252	Aspergillus terreus	92.00	8.00e-65	239.00
IUUC-Ame-010785	Astyanax mexicanus	90.53	3.00e-48	181.00
IUUC-Bgr-012115	Blumeria graminis	91.20	3.00e-64	234.00
IUUC-Bta-013360	Bos taurus	91.41	4.00e-66	241.00
IUUC-Bci-013851	Botrytis cinerea	92.19	9.00e-67	243.00
IUUC-Bdi-014499	Brachypodium distachyon	96.09	2.00e-70	255.00
IUUC-Bol-015961	Brassica oleracea	94.53	2.00e-69	251.00
IUUC-Cel-018677	Caenorhabditis elegans	88.28	3.00e-63	231.00
IUUC-Cja-019572	Callithrix jacchus	91.41	4.00e-66	241.00
IUUC-Cfa-020339	Canis familiaris	91.41	4.00e-66	241.00
IUUC-Cpo-021534	Cavia porcellus	91.41	4.00e-66	241.00
IUUC-Csa-023398	Chlorocebus sabaeus	91.41	4.00e-66	241.00
IUUC-Cin-025266	Ciona intestinalis	88.28	2.00e-64	235.00
IUUC-Csv-026105	Ciona savignyi	88.19	2.00e-64	235.00
IUUC-Cgl-026502	Colletotrichum gloeosporioides	90.40	9.00e-64	236.00
IUUC-Cne-026913	Cryptococcus neoformans	88.28	3.00e-64	234.00
IUUC-Cme-027344	Cyanidioschyzon merolae	93.33	1.00e-45	172.00
IUUC-Dre-028761	Danio rerio	92.97	7.00e-67	243.00
IUUC-Dno-028899	Dasypus novemcinctus	91.41	1.00e-65	239.00
IUUC-Dme-031588	Drosophila melanogaster	92.19	1.00e-66	243.00
IUUC-Ete-033120	Echinops telfairi	91.41	4.00e-66	241.00
IUUC-Eca-033787	Equus caballus	91.41	4.00e-66	241.00
IUUC-Eeu-035081	Erinaceus europaeus	95.71	3.00e-34	134.00
IUUC-Fca-035725	Felis catus	91.41	4.00e-66	241.00
IUUC-Fox-037870	Fusarium oxysporum	90.62	5.00e-66	240.00
IUUC-Fso-038461	Fusarium solani	95.00	2.00e-41	157.00
IUUC-Gmo-039163	Gadus morhua	92.19	1.00e-66	242.00
IUUC-Ggr-040034	Gaeumannomyces graminis	90.62	3.00e-66	241.00
IUUC-Gga-040909	Gallus gallus	91.41	5.00e-66	240.00
IUUC-Gac-041640	Gasterosteus aculeatus	92.19	2.00e-66	242.00
IUUC-Gma-043254	Glycine max	94.53	7.00e-70	253.00
IUUC-Ggo-045411	Gorilla gorilla	91.41	4.00e-66	241.00
IUUC-Hsa-046609	Homo sapiens	72.26	6.00e-51	190.00
IUUC-Hvu-047579	Hordeum vulgare	70.59	4.00e-51	191.00
IUUC-Itr-048586	Ictidomys tridecemlineatus	91.41	1.00e-66	243.00
IUUC-Kpa-049279	Komagataella pastoris	88.28	1.00e-64	236.00
IUUC-Lch-049971	Latimeria chalumnae	92.19	2.00e-66	243.00
IUUC-Lpe-051472	Leersia perrieri	79.70	2.00e-52	198.00
IUUC-Loc-052117	Lepisosteus oculatus	92.19	1.00e-66	243.00
IUUC-Lma-053049	Leptosphaeria maculans	92.19	1.00e-66	242.00
IUUC-Laf-054284	Loxodonta africana	91.41	1.00e-66	244.00
IUUC-Mcc-055710	Macaca mulatta	90.00	5.00e-65	238.00
IUUC-Meu-056411	Macropus eugenii	91.41	4.00e-66	241.00
IUUC-Mor-057008	Magnaporthe oryzae	89.06	8.00e-65	236.00
IUUC-Mpo-057360	Magnaporthe poae	90.62	4.00e-66	241.00
IUUC-Mtr-058437	Medicago truncatula	93.75	9.00e-69	249.00
IUUC-Mla-059080	Melampsora laricipopulina	90.29	2.00e-50	188.00
IUUC-Mmr-061335	Microcebus murinus	85.16	2.00e-59	218.00
IUUC-Mdo-062752	Monodelphis domestica	91.41	4.00e-66	241.00
IUUC-Mmu-063548	Mus musculus	91.41	1.00e-66	244.00
IUUC-Mac-064915	Musa acuminata	95.31	8.00e-70	253.00
IUUC-Mpu-066513	Mustela putorius furo	91.41	4.00e-66	241.00
IUUC-Mlu-068010	Myotis lucifugus	89.06	1.00e-64	236.00
IUUC-Nfi-068358	Neosartorya fischeri	92.06	5.00e-65	237.00
IUUC-Ncr-068799	Neurospora crassa	90.62	1.00e-65	239.00
IUUC-Opr-070655	Ochotona princeps	91.41	4.00e-66	241.00
IUUC-Ont-072180	Oreochromis niloticus	92.06	2.00e-65	239.00
IUUC-Oan-073196	Ornithorhynchus anatinus	91.41	4.00e-66	241.00
IUUC-Oba-075092	Oryza barthii	95.31	5.00e-70	253.00
IUUC-Obr-076156	Oryza brachyantha	95.31	4.00e-70	254.00
IUUC-Ogl-077471	Oryza glaberrima	95.31	5.00e-70	253.00
IUUC-Ogu-078259	Oryza glumaepatula	95.31	5.00e-70	253.00
IUUC-Oin-079901	Oryza indica	95.31	5.00e-70	253.00
IUUC-Ome-081343	Oryza meridionalis	95.31	5.00e-70	253.00
IUUC-Oni-082301	Oryza nivara	83.17	2.00e-35	139.00
IUUC-Opu-083839	Oryza punctata	64.93	1.00e-36	145.00
IUUC-Oru-085252	Oryza rufipogon	95.31	5.00e-70	253.00
IUUC-Osa-085747	Oryza sativa	78.36	3.00e-51	191.00
IUUC-Ola-086333	Oryzias latipes	91.41	3.00e-66	241.00
IUUC-Olu-087819	Ostreococcus lucimarinus	84.38	3.00e-61	224.00
IUUC-Oga-088027	Otolemur garnettii	91.41	4.00e-66	241.00
IUUC-Oar-090419	Ovis aries	91.41	4.00e-66	241.00
IUUC-Ptr-091593	Pan troglodytes	91.41	4.00e-66	241.00
IUUC-Pan-091806	Papio anubis	89.84	1.00e-64	236.00
IUUC-Psi-093654	Pelodiscus sinensis	91.41	4.00e-66	241.00
IUUC-Ppa-095174	Physcomitrella patens	94.53	3.00e-69	251.00
IUUC-Pfo-096492	Poecilia formosa	92.19	2.00e-66	242.00
IUUC-Pab-098004	Pongo abelii	91.41	4.00e-66	241.00
IUUC-Pop-098929	Populus trichocarpa	95.31	8.00e-70	253.00
IUUC-Ppe-101497	Prunus persica	94.53	2.00e-69	251.00
IUUC-Pva-102945	Pteropus vampyrus	91.41	4.00e-66	241.00
IUUC-Pgr-103268	Puccinia graminis	91.41	8.00e-67	244.00
IUUC-Ptt-103804	Puccinia triticina	93.07	2.00e-52	196.00
IUUC-Pte-104101	Pyrenophora teres	90.62	8.00e-66	240.00
IUUC-Pyt-104639	Pyrenophora triticirepentis	90.62	1.00e-65	239.00
IUUC-Rno-105290	Rattus norvegicus	91.41	4.00e-66	241.00
IUUC-Sce-106249	Saccharomyces cerevisiae	89.84	2.00e-65	238.00
IUUC-Sha-106570	Sarcophilus harrisii	91.41	4.00e-66	241.00
IUUC-Sja-107834	Schizosaccharomyces japonicus	92.97	4.00e-67	244.00
IUUC-Spo-108045	Schizosaccharomyces pombe	92.19	3.00e-66	241.00
IUUC-Ssl-108670	Sclerotinia sclerotiorum	92.97	4.00e-67	244.00
IUUC-Sit-110085	Setaria italica	92.86	1.00e-68	250.00
IUUC-Sly-111884	Solanum lycopersicum	95.31	8.00e-70	253.00
IUUC-Stu-112385	Solanum tuberosum	95.04	5.00e-66	240.00
IUUC-Sar-112942	Sorex araneus	92.19	1.00e-66	242.00
IUUC-Sbi-114790	Sorghum bicolor	94.53	3.00e-69	251.00
IUUC-Sre-114908	Sporisorium reilianum	89.06	3.00e-64	234.00
IUUC-Ssc-116417	Sus scrofa	91.41	4.00e-66	241.00
IUUC-Tru-117557	Takifugu rubripes	92.19	1.00e-66	242.00
IUUC-Tni-119715	Tetraodon nigroviridis	92.19	1.00e-66	242.00
IUUC-Tca-121404	Theobroma cacao	94.53	2.00e-69	252.00
IUUC-Tvi-122611	Trichoderma virens	89.06	2.00e-65	238.00
IUUC-Tae-125373	Triticum aestivum	78.34	1.00e-65	239.00
IUUC-Tur-126527	Triticum urartu	96.09	2.00e-70	255.00
IUUC-Tme-127138	Tuber melanosporum	92.80	1.00e-65	239.00
IUUC-Tbe-127851	Tupaia belangeri	97.37	9.00e-40	152.00
IUUC-Ttr-128939	Tursiops truncatus	91.41	4.00e-66	241.00
IUUC-Uma-129619	Ustilago maydis	89.06	3.00e-64	234.00
IUUC-Vda-129775	Verticillium dahliae	90.48	1.00e-64	236.00
IUUC-Vvi-131414	Vitis vinifera	94.53	2.00e-69	251.00
IUUC-Xtr-131921	Xenopus tropicalis	91.41	4.00e-66	241.00
IUUC-Xma-134071	Xiphophorus maculatus	92.19	2.00e-66	242.00
IUUC-Yli-134671	Yarrowia lipolytica	92.19	3.00e-66	241.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence