iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114748

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G283000

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g031930	Sb04g031930.1	Sb04g031930.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.30e-27	95.5	144	180

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDlrtgvl 35
           gH+ +vt++a+   s + l sGs Dgt+++WD  tg +
   Q: 144  GHEKGVTGIALpagS-DKLYSGSKDGTVRMWDCQTGQC 180
           8**********9754.899***************9988 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MDIETDGRFG NKRVHHRLGP GSGGAPSSTN GKVCNYWRAG RCNRFPCPFL HSELPEAAPP 60
KRPSGPGGNV WRNPHTGGRG GGGGGHSRWG KGPGGGSGIV SHKPPDRPCK FFLAGTECSY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCGACCGCGC GAGCTGAACC CGACCCAGCA ACCAGGCCAC CGCTCCTTTC CTCTCCGATC 60
CGGATCTCCG CACCCGCTCC GGCGAGCCAT CGCCGCGTCG CCTCCACGCG GCCGACTACT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0853--WD repeat
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR000571--Znf_CCCH

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS50103--ZF_C3H1

Pfam

PF00400--WD40
PF00642--zf-CCCH

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40
SM00356--ZnF_C3H1

Gene Ontology

GO:0046872--F:metal ion binding

KEGG

sbi:SORBI_04g031930

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002831	Amborella trichopoda	57.31	8.00e-140	489.00
IUUC-Aly-005699	Arabidopsis lyrata	58.54	3.00e-146	510.00
IUUC-Ath-007001	Arabidopsis thaliana	57.81	3.00e-147	513.00
IUUC-Bdi-014857	Brachypodium distachyon	81.57	0.00e+00	690.00
IUUC-Bol-016382	Brassica oleracea	57.64	1.00e-144	505.00
IUUC-Bra-017351	Brassica rapa	59.49	4.00e-148	516.00
IUUC-Gma-042894	Glycine max	58.20	1.00e-137	482.00
IUUC-Hvu-047824	Hordeum vulgare	80.90	4.00e-161	559.00
IUUC-Lpe-051596	Leersia perrieri	72.62	1.00e-171	594.00
IUUC-Mtr-058068	Medicago truncatula	66.46	1.00e-125	442.00
IUUC-Mac-065071	Musa acuminata	65.65	3.00e-166	577.00
IUUC-Oba-075769	Oryza barthii	74.35	1.00e-174	604.00
IUUC-Obr-076011	Oryza brachyantha	81.29	0.00e+00	704.00
IUUC-Ogu-078248	Oryza glumaepatula	75.23	1.00e-180	624.00
IUUC-Oin-079981	Oryza indica	83.49	0.00e+00	717.00
IUUC-Olo-080571	Oryza longistaminata	73.72	3.00e-165	573.00
IUUC-Ome-081598	Oryza meridionalis	74.31	1.00e-178	617.00
IUUC-Oni-082711	Oryza nivara	74.54	5.00e-179	619.00
IUUC-Opu-083451	Oryza punctata	79.04	0.00e+00	702.00
IUUC-Oru-085129	Oryza rufipogon	74.35	1.00e-174	604.00
IUUC-Osa-085619	Oryza sativa	81.71	4.00e-155	539.00
IUUC-Ppa-096012	Physcomitrella patens	53.71	9.00e-108	382.00
IUUC-Pop-099994	Populus trichocarpa	57.81	1.00e-144	505.00
IUUC-Ppe-101609	Prunus persica	60.55	5.00e-152	529.00
IUUC-Smo-108900	Selaginella moellendorffii	50.60	7.00e-102	363.00
IUUC-Sit-109731	Setaria italica	90.70	0.00e+00	734.00
IUUC-Sly-111514	Solanum lycopersicum	56.02	5.00e-135	473.00
IUUC-Stu-112646	Solanum tuberosum	55.89	6.00e-140	489.00
IUUC-Tca-121658	Theobroma cacao	55.68	4.00e-135	473.00
IUUC-Tae-125577	Triticum aestivum	83.37	0.00e+00	704.00
IUUC-Tur-126095	Triticum urartu	80.07	4.00e-128	451.00
IUUC-Vvi-131444	Vitis vinifera	57.24	9.00e-146	509.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence