iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099116

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000351

Gene Name

POPTRDRAFT_575266; POPTR_0015s09870g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0015s09870	POPTR_0015s09870.1	POPTR_0015s09870.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.50e-29	100.1	348	386
UBD/Beta-Prp	8.30e-63	213.4	264	479

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDlrtgvll 36
           gHtd+v++++    s++++vs+++D tikvWDl +g ++
   Q: 348  GHTDKVCAVDVskiSTRHVVSAAYDRTIKVWDLQKGFCT 386
           8*********9999889****************998775 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvl 98
           +h++ + ++ f  ++  l++g++d++ik wd+ tg+l ++l+g+ + v ++++ +d   ++ +s+ ++++vwd+ tg   htl+gh+d+v+
   Q: 264  AHEGGCASILFEYNSGKLISGGQDRSIKMWDTNTGSLSHTLYGCLGSVLDLSITHDNRSIIAASSSNNLYVWDVTTGRVRHTLTGHTDKVC 354
           67777888999888888999999*********************************9999999999************************* PP
   S: 99   slsfsp.sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsf 188
           ++++s+ s+ ++vs+  drti+vwdl++g c ++    h+   n+++++ dg+ + sG+ D+ +rlWd++tgkll +    h  +v+s+s+
   Q: 355  AVDVSKiSTRHVVSAAYDRTIKVWDLQKGFCTNT-IIFHS-NCNSLCFSMDGQTICSGHVDGNLRLWDIQTGKLLSEVAA-HSLAVTSISV 442
           ******888***********************94.33333.47888999999**************************87.********** PP
   S: 189  dsngkelvsgsldgtvklwdlqtgecvrtlnghtdnv 225
           ++ng  +++ ++d+  +l+d+++ e+  tl++  + v
   Q: 443  SRNGSVVLTSGRDNLHNLFDMRSLEVCGTLRATGNRV 479
           **********************999999999887766 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MQGVVGHDRQ RCSCSPSSHR KLHNPKEIDS TKHQLINLSI DMSQEEIGLE AIKQALKALK 60
KRHLLEEGAH APAFIALSRP IISQGSEWKE KAENLEVELQ QCYKAQSLLS NQLVVEVAES 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCAGGGAG TGGTCGGTCA TGACGTGAAT AATTGTCTCT GATCTTTAAT CTTTTATTAC 60
GGCTTGCTGT ATGCTCGGGT CGATTAAGTT TTATTTAATT TAGATTTAAA ATTAAATTAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR013923--Autophagy-rel_prot_16
IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08614--ATG16
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000421--C:autophagosome membrane
GO:0000045--P:autophagosome assembly

KEGG

pop:POPTR_0015s09870g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000090	Aegilops tauschii	52.22	4.00e-144	504.00
IUUC-Aml-002242	Ailuropoda melanoleuca	31.21	1.00e-38	153.00
IUUC-Atr-003073	Amborella trichopoda	63.06	2.00e-158	551.00
IUUC-Apl-003384	Anas platyrhynchos	33.99	8.00e-47	181.00
IUUC-Aca-004962	Anolis carolinensis	33.33	1.00e-44	174.00
IUUC-Aly-005435	Arabidopsis lyrata	74.46	0.00e+00	790.00
IUUC-Ath-006948	Arabidopsis thaliana	73.48	0.00e+00	799.00
IUUC-Ame-010915	Astyanax mexicanus	33.99	8.00e-41	160.00
IUUC-Bta-012388	Bos taurus	31.02	9.00e-45	174.00
IUUC-Bdi-014231	Brachypodium distachyon	52.82	9.00e-153	533.00
IUUC-Bol-016174	Brassica oleracea	74.46	0.00e+00	784.00
IUUC-Bra-017165	Brassica rapa	73.37	0.00e+00	786.00
IUUC-Cel-018234	Caenorhabditis elegans	24.44	2.00e-27	116.00
IUUC-Cja-020002	Callithrix jacchus	30.92	2.00e-35	143.00
IUUC-Cfa-020484	Canis familiaris	32.01	1.00e-44	174.00
IUUC-Cpo-022156	Cavia porcellus	26.55	1.00e-45	177.00
IUUC-Csa-024019	Chlorocebus sabaeus	27.80	6.00e-50	191.00
IUUC-Cho-024311	Choloepus hoffmanni	35.10	7.00e-34	138.00
IUUC-Cin-025260	Ciona intestinalis	32.36	2.00e-36	146.00
IUUC-Dre-027702	Danio rerio	33.67	2.00e-46	179.00
IUUC-Dno-029728	Dasypus novemcinctus	31.35	2.00e-44	173.00
IUUC-Dor-030897	Dipodomys ordii	27.97	5.00e-41	161.00
IUUC-Dme-031595	Drosophila melanogaster	32.19	4.00e-38	152.00
IUUC-Ete-032969	Echinops telfairi	31.72	2.00e-43	169.00
IUUC-Eca-034214	Equus caballus	32.85	8.00e-42	164.00
IUUC-Eeu-034537	Erinaceus europaeus	30.36	4.00e-36	145.00
IUUC-Fca-036005	Felis catus	32.01	3.00e-44	172.00
IUUC-Fal-037593	Ficedula albicollis	33.88	5.00e-47	181.00
IUUC-Gmo-039042	Gadus morhua	25.15	1.00e-36	147.00
IUUC-Gga-040986	Gallus gallus	33.88	5.00e-48	185.00
IUUC-Gac-041351	Gasterosteus aculeatus	27.02	3.00e-51	196.00
IUUC-Gma-043265	Glycine max	81.89	0.00e+00	882.00
IUUC-Ggo-045427	Gorilla gorilla	31.79	3.00e-44	172.00
IUUC-Hsa-046632	Homo sapiens	31.79	2.00e-44	172.00
IUUC-Hvu-047655	Hordeum vulgare	52.84	1.00e-118	419.00
IUUC-Itr-048504	Ictidomys tridecemlineatus	27.11	6.00e-50	191.00
IUUC-Lpe-051254	Leersia perrieri	55.75	6.00e-156	543.00
IUUC-Loc-052610	Lepisosteus oculatus	33.22	3.00e-48	186.00
IUUC-Laf-053936	Loxodonta africana	31.00	6.00e-44	171.00
IUUC-Mcc-055504	Macaca mulatta	32.12	2.00e-44	173.00
IUUC-Meu-056516	Macropus eugenii	32.25	6.00e-45	174.00
IUUC-Mtr-058062	Medicago truncatula	77.91	0.00e+00	815.00
IUUC-Mla-059081	Melampsora laricipopulina	30.42	8.00e-29	121.00
IUUC-Mga-059777	Meleagris gallopavo	33.44	3.00e-45	176.00
IUUC-Mmr-061298	Microcebus murinus	31.79	8.00e-45	174.00
IUUC-Mdo-062969	Monodelphis domestica	32.25	4.00e-45	175.00
IUUC-Mmu-064076	Mus musculus	31.44	5.00e-45	175.00
IUUC-Mac-065161	Musa acuminata	66.88	0.00e+00	630.00
IUUC-Mpu-066196	Mustela putorius furo	31.68	2.00e-44	173.00
IUUC-Mlu-067651	Myotis lucifugus	32.57	3.00e-44	172.00
IUUC-Nle-069853	Nomascus leucogenys	30.79	8.00e-42	164.00
IUUC-Opr-071039	Ochotona princeps	30.69	3.00e-40	159.00
IUUC-Ont-072489	Oreochromis niloticus	33.55	4.00e-48	185.00
IUUC-Oan-072703	Ornithorhynchus anatinus	31.02	5.00e-45	175.00
IUUC-Ocu-074205	Oryctolagus cuniculus	31.79	3.00e-44	172.00
IUUC-Oba-075619	Oryza barthii	55.73	1.00e-158	552.00
IUUC-Obr-076632	Oryza brachyantha	54.56	9.00e-150	523.00
IUUC-Ogl-077671	Oryza glaberrima	55.95	1.00e-158	552.00
IUUC-Ogu-078052	Oryza glumaepatula	55.73	2.00e-158	551.00
IUUC-Oin-079611	Oryza indica	56.14	1.00e-156	546.00
IUUC-Olo-080408	Oryza longistaminata	56.14	4.00e-148	517.00
IUUC-Ome-081560	Oryza meridionalis	55.73	3.00e-158	551.00
IUUC-Oni-082145	Oryza nivara	55.73	1.00e-158	552.00
IUUC-Opu-083918	Oryza punctata	56.16	1.00e-147	516.00
IUUC-Oru-084858	Oryza rufipogon	55.92	7.00e-157	546.00
IUUC-Osa-086277	Oryza sativa	55.92	9.00e-157	546.00
IUUC-Ola-086964	Oryzias latipes	36.08	8.00e-43	166.00
IUUC-Olu-087622	Ostreococcus lucimarinus	34.69	6.00e-68	250.00
IUUC-Oga-088765	Otolemur garnettii	27.42	2.00e-50	193.00
IUUC-Oar-090196	Ovis aries	31.45	1.00e-42	167.00
IUUC-Ptr-091676	Pan troglodytes	31.79	2.00e-44	172.00
IUUC-Pan-092068	Papio anubis	32.12	2.00e-44	173.00
IUUC-Psi-093367	Pelodiscus sinensis	33.66	1.00e-49	190.00
IUUC-Ppa-095699	Physcomitrella patens	52.20	2.00e-147	515.00
IUUC-Pfo-096067	Poecilia formosa	27.22	9.00e-48	184.00
IUUC-Pab-098111	Pongo abelii	31.79	4.00e-44	172.00
IUUC-Pca-100680	Procavia capensis	33.63	1.00e-34	140.00
IUUC-Ppe-101790	Prunus persica	83.30	0.00e+00	890.00
IUUC-Pva-102871	Pteropus vampyrus	32.01	8.00e-46	177.00
IUUC-Pgr-103597	Puccinia graminis	30.29	3.00e-28	120.00
IUUC-Rno-106088	Rattus norvegicus	31.10	5.00e-45	175.00
IUUC-Sha-106984	Sarcophilus harrisii	32.69	2.00e-45	176.00
IUUC-Smo-108983	Selaginella moellendorffii	49.49	4.00e-139	487.00
IUUC-Sit-110828	Setaria italica	56.97	4.00e-159	553.00
IUUC-Sly-111009	Solanum lycopersicum	77.56	0.00e+00	773.00
IUUC-Stu-112370	Solanum tuberosum	77.21	0.00e+00	839.00
IUUC-Sar-113109	Sorex araneus	33.49	3.00e-26	112.00
IUUC-Sbi-114819	Sorghum bicolor	55.94	6.00e-156	543.00
IUUC-Ssc-116241	Sus scrofa	26.26	5.00e-45	175.00
IUUC-Tgu-116576	Taeniopygia guttata	26.80	4.00e-49	189.00
IUUC-Tru-118336	Takifugu rubripes	29.28	2.00e-35	143.00
IUUC-Tsy-119006	Tarsius syrichta	32.12	2.00e-44	173.00
IUUC-Tni-120300	Tetraodon nigroviridis	32.57	9.00e-46	177.00
IUUC-Tca-121002	Theobroma cacao	83.27	0.00e+00	895.00
IUUC-Tae-123139	Triticum aestivum	52.02	3.00e-144	504.00
IUUC-Tur-126463	Triticum urartu	52.02	1.00e-143	503.00
IUUC-Tbe-127631	Tupaia belangeri	31.79	3.00e-44	172.00
IUUC-Ttr-129005	Tursiops truncatus	34.93	2.00e-37	150.00
IUUC-Vvi-130878	Vitis vinifera	81.18	0.00e+00	854.00
IUUC-Xtr-132798	Xenopus tropicalis	30.07	7.00e-36	144.00
IUUC-Xma-133264	Xiphophorus maculatus	27.27	2.00e-48	186.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence