iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 1    CaiCledfkdg..plvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl++f+++  +++lp C+H+fh+ C+  w       + + +CPlCr
   Q: 217  CSVCLSEFEEEetLRLLPkCKHAFHLYCIDTW------LRSHTNCPLCR 259
           ********5544499999**************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MIDTVNLLLL TKLDSKERKQ KRENKNEDNS HLLFSFFFLF LHCLLIDDLE ARIMRFLHRF 60
LLEDMPKETF SDSLCKNNCI QELKTLGYCS SYCLDECPSI CEIVVISGLS PPAEIHHDDN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTTTTTTTG TAAAGCTTAT AATTTTTATT TTGTACCAAC ATTTAAAAAT CAATTATTTT 60
GGTGAAATTA GGATGATAGA TACCGTCAAC CTACTTTTGT TGACCAAACT TGATTCTAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0005886--C:plasma membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT4G33565

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006089	Arabidopsis lyrata	84.18	2.00e-121	427.00
IUUC-Bdi-014119	Brachypodium distachyon	56.25	2.00e-24	105.00
IUUC-Bol-016093	Brassica oleracea	72.86	6.00e-66	243.00
IUUC-Bra-017727	Brassica rapa	61.62	3.00e-74	272.00
IUUC-Mvi-060376	Microbotryum violaceum	43.33	3.00e-09	56.20
IUUC-Oin-079205	Oryza indica	56.10	4.00e-23	101.00
IUUC-Oni-082231	Oryza nivara	56.10	3.00e-23	102.00
IUUC-Oru-084771	Oryza rufipogon	56.10	2.00e-25	109.00
IUUC-Osa-085718	Oryza sativa	56.10	3.00e-23	102.00
IUUC-Pop-099354	Populus trichocarpa	47.24	5.00e-43	167.00
IUUC-Ppe-101356	Prunus persica	50.24	2.00e-43	168.00
IUUC-Sbi-114872	Sorghum bicolor	58.75	2.00e-24	105.00
IUUC-Tca-121350	Theobroma cacao	43.95	2.00e-41	162.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence