iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111023

Ensembl Protein ID

Solyc01g111030.1.1

UniProt Accession

K4B3W6; K4B3W6_SOLLC

Protein Name

Ribosome biogenesis protein WDR12 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc01g111030.1	Solyc01g111030.1.1	Solyc01g111030.1.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.70e-25	88.7	394	428

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           H+ +++ +++   +  +l+s+s+Dg++++WDlrt 
   Q: 394  HSFWISTCKWheKSrFHLLSASYDGKVMLWDLRTA 428
           7779******9843478***************986 PP

Organism

Solanum lycopersicum

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDNNGQVEEA ARRVQVRFVT KLKPPFKAPP TSIAIPSNLT RLGLSSIANN LLKAGKDNWN 60
PEPFDFLIDG ELVRMSLEEF LLAKGISAEK ILEIEYIRAV APRKQEEPSL HDDWVSAVDG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGATAATA ATGGGCAAGT CGAAGAGGCT GCAAGGCGTG TACAGGTCCG GTTCGTAACG 60
AAATTGAAGC CCCCATTTAA GGCCCCGCCT ACTTCCATTG CTATTCCCTC CAACCTCACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000460--P:maturation of 5.8S rRNA
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000470--P:maturation of LSU-rRNA
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	58.96	2.00e-163	567.00
IUUC-Aml-001997	Ailuropoda melanoleuca	32.87	3.00e-52	198.00
IUUC-Atr-002544	Amborella trichopoda	57.51	2.00e-153	534.00
IUUC-Apl-003981	Anas platyrhynchos	33.67	3.00e-54	204.00
IUUC-Aly-006455	Arabidopsis lyrata	64.15	2.00e-177	614.00
IUUC-Ath-006669	Arabidopsis thaliana	63.83	5.00e-173	599.00
IUUC-Ago-007864	Ashbya gossypii	29.92	5.00e-47	181.00
IUUC-Bta-012829	Bos taurus	32.08	4.00e-54	204.00
IUUC-Bdi-014351	Brachypodium distachyon	59.44	9.00e-158	548.00
IUUC-Bol-016514	Brassica oleracea	64.38	3.00e-166	577.00
IUUC-Bra-016988	Brassica rapa	64.16	3.00e-166	577.00
IUUC-Cel-018569	Caenorhabditis elegans	24.63	4.00e-22	98.20
IUUC-Cja-019468	Callithrix jacchus	32.52	5.00e-52	197.00
IUUC-Cpo-022260	Cavia porcellus	33.41	1.00e-54	206.00
IUUC-Csa-023989	Chlorocebus sabaeus	32.52	4.00e-52	197.00
IUUC-Cin-025789	Ciona intestinalis	28.48	2.00e-47	182.00
IUUC-Dme-032189	Drosophila melanogaster	28.82	1.00e-46	179.00
IUUC-Ete-032247	Echinops telfairi	30.31	8.00e-47	180.00
IUUC-Eca-034285	Equus caballus	32.52	1.00e-53	202.00
IUUC-Fca-036114	Felis catus	32.30	2.00e-53	202.00
IUUC-Fal-036891	Ficedula albicollis	33.24	7.00e-50	190.00
IUUC-Gga-040610	Gallus gallus	32.30	2.00e-57	215.00
IUUC-Gma-043425	Glycine max	64.15	1.00e-175	608.00
IUUC-Ggo-045179	Gorilla gorilla	32.52	4.00e-53	201.00
IUUC-Hsa-046114	Homo sapiens	32.52	2.00e-52	198.00
IUUC-Hvu-047331	Hordeum vulgare	58.84	5.00e-141	493.00
IUUC-Kpa-049304	Komagataella pastoris	28.71	3.00e-44	171.00
IUUC-Lpe-051675	Leersia perrieri	58.00	7.00e-160	556.00
IUUC-Loc-052868	Lepisosteus oculatus	32.74	1.00e-62	233.00
IUUC-Lma-053258	Leptosphaeria maculans	29.78	2.00e-43	171.00
IUUC-Laf-053993	Loxodonta africana	31.86	5.00e-54	204.00
IUUC-Mcc-055128	Macaca mulatta	27.88	2.00e-32	132.00
IUUC-Mpo-057463	Magnaporthe poae	32.43	4.00e-17	80.50
IUUC-Mtr-058367	Medicago truncatula	61.32	4.00e-165	573.00
IUUC-Mga-059745	Meleagris gallopavo	32.72	1.00e-54	206.00
IUUC-Mmu-063546	Mus musculus	31.42	7.00e-53	200.00
IUUC-Mac-065540	Musa acuminata	59.17	3.00e-159	553.00
IUUC-Mpu-066284	Mustela putorius furo	32.31	4.00e-54	204.00
IUUC-Ocu-074008	Oryctolagus cuniculus	32.74	3.00e-55	208.00
IUUC-Obr-076721	Oryza brachyantha	57.26	3.00e-157	547.00
IUUC-Ogl-077229	Oryza glaberrima	57.59	2.00e-158	550.00
IUUC-Oin-079683	Oryza indica	57.42	6.00e-159	553.00
IUUC-Ome-081834	Oryza meridionalis	58.10	7.00e-158	549.00
IUUC-Oni-082507	Oryza nivara	54.85	8.00e-147	512.00
IUUC-Opu-083396	Oryza punctata	57.66	3.00e-159	554.00
IUUC-Oru-085220	Oryza rufipogon	54.85	4.00e-147	513.00
IUUC-Osa-085767	Oryza sativa	57.42	6.00e-159	553.00
IUUC-Olu-087740	Ostreococcus lucimarinus	31.74	1.00e-59	223.00
IUUC-Oar-089335	Ovis aries	32.30	2.00e-54	206.00
IUUC-Ptr-091320	Pan troglodytes	32.52	2.00e-52	198.00
IUUC-Pan-092833	Papio anubis	32.74	3.00e-52	198.00
IUUC-Psi-093504	Pelodiscus sinensis	32.67	1.00e-54	206.00
IUUC-Pma-094189	Petromyzon marinus	34.43	6.00e-58	217.00
IUUC-Pno-094929	Phaeosphaeria nodorum	28.01	8.00e-40	157.00
IUUC-Ppa-095429	Physcomitrella patens	49.57	1.00e-121	429.00
IUUC-Pab-097571	Pongo abelii	32.52	3.00e-52	198.00
IUUC-Pop-099977	Populus trichocarpa	66.31	0.00e+00	627.00
IUUC-Pca-100394	Procavia capensis	31.03	5.00e-45	174.00
IUUC-Ppe-101848	Prunus persica	62.50	8.00e-175	605.00
IUUC-Pte-104135	Pyrenophora teres	28.42	1.00e-40	161.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	27.66	2.00e-42	166.00
IUUC-Rno-105114	Rattus norvegicus	31.19	6.00e-53	200.00
IUUC-Sce-106401	Saccharomyces cerevisiae	28.80	3.00e-47	182.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	27.07	2.00e-38	152.00
IUUC-Spo-108134	Schizosaccharomyces pombe	27.97	1.00e-34	140.00
IUUC-Sit-110354	Setaria italica	57.94	3.00e-160	557.00
IUUC-Stu-112169	Solanum tuberosum	89.57	0.00e+00	825.00
IUUC-Sar-113596	Sorex araneus	29.50	4.00e-39	154.00
IUUC-Sbi-114193	Sorghum bicolor	56.77	6.00e-151	526.00
IUUC-Sre-115002	Sporisorium reilianum	29.13	4.00e-21	95.50
IUUC-Ssc-116066	Sus scrofa	32.30	7.00e-54	203.00
IUUC-Tgu-117048	Taeniopygia guttata	33.67	5.00e-54	204.00
IUUC-Tca-121605	Theobroma cacao	66.52	2.00e-180	624.00
IUUC-Tae-125861	Triticum aestivum	59.18	3.00e-164	570.00
IUUC-Tur-126586	Triticum urartu	58.60	1.00e-148	518.00
IUUC-Tme-126900	Tuber melanosporum	29.83	6.00e-51	194.00
IUUC-Vpa-130260	Vicugna pacos	32.30	3.00e-54	204.00
IUUC-Vvi-131009	Vitis vinifera	69.36	0.00e+00	665.00
IUUC-Yli-134531	Yarrowia lipolytica	27.40	1.00e-33	137.00
IUUC-Zma-135509	Zea mays	57.08	3.00e-159	554.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence