iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Atr-003171

Ensembl Protein ID

ERN05309

UniProt Accession

W1PC89; W1PC89_AMBTC

Genbank Protein ID

ERN05309.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

KI394011

Gene Name

AMTR_s00007p00157660

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AMTR_s00007p00157660	ERN05309	ERN05309

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.40e-06	28.1	407	443

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvl 35
           gH++ v +++   s+  ++sGs D t++vW++ tg++
   Q: 407  GHSSFVLSISMeaSGQWIASGSSDRTVRVWEVATGRC 443
           89999*****9987799******************98 PP

Organism

Amborella trichopoda

Protein Sequence
(Fasta)

MGVYKLGILP FLERDESMSE GTGECKKRGW APKSDSSGED EGKDPEAEEI DSEDELSLKS 60
DSSGEDEGKD PEAEESDTLE DEYLSSGDDE GKDASAASES AEVENDSSGE DEGEDLKAEE 120

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Nucleotide Sequence
(Fasta)

ATGGGTGTTT ACAAGTTGGG GATTTTACCC TTTTTAGAGC GAGATGAGAG TATGAGTGAA 60
GGGACAGGAG AGTGCAAAAA AAGAGGCTGG GCCCCAAAAG TTTAAAACTA TAAACCAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0006364--P:rRNA processing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Fal-037438	Ficedula albicollis	38.89	6.00e-61	227.00
IUUC-Gma-044307	Glycine max	63.64	2.00e-169	588.00
IUUC-Pop-099043	Populus trichocarpa	68.46	1.00e-146	512.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence