iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sja-107908

Ensembl Protein ID

EEB07726

UniProt Accession

B6K1A5; B6K1A5_SCHJY

Genbank Protein ID

EEB07726.1

Protein Name

Ribosome biogenesis protein ERB1; Eukaryotic ribosome biogenesis protein 1

Genbank Nucleotide ID

KE651166

Gene Name

ERB1; SJAG_02830

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SJAG_02830	EEB07726	EEB07726

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.20e-13	48.0	396	433

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gH+++v++l+   +   l+sG+dDg+++vW++ tg+++
   Q: 396  GHKGRVRSLDAhREgLWLASGGDDGVVRVWEILTGRCV 433
           8*******988766577*******************98 PP

Organism

Schizosaccharomyces japonicus

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MKEIQQQRKR KSEKLLDAVS GAQNEKENGS SFISDLKKHP VDEKENDQKI NEDEDEDEVE 60
EEEEGETSED SFAGFESEEE SLPELSPDVS EDESDIEEID AGYSSDSSTE DGPARLYESP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAGGATTAAG GTTTCGAACG AGCAAGCGTA TGCAAGACTC TGCCATCCTC CACCATGAAG 60
GAGATTCAGC AGCAGCGGAA ACGGAAAAGT GAGAAGCTTT TGGACGCCGT CTCAGGTGCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0070180--F:large ribosomal subunit rRNA binding
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	38.86	6.00e-106	376.00
IUUC-Aml-001507	Ailuropoda melanoleuca	39.56	4.00e-123	433.00
IUUC-Atr-003141	Amborella trichopoda	36.79	2.00e-70	258.00
IUUC-Apl-003545	Anas platyrhynchos	38.53	7.00e-113	399.00
IUUC-Aly-005649	Arabidopsis lyrata	41.90	4.00e-139	486.00
IUUC-Ath-007625	Arabidopsis thaliana	41.06	2.00e-133	467.00
IUUC-Ago-007958	Ashbya gossypii	48.07	0.00e+00	644.00
IUUC-Acl-008344	Aspergillus clavatus	48.00	9.00e-165	572.00
IUUC-Afl-008616	Aspergillus flavus	48.47	8.00e-171	592.00
IUUC-Afu-009083	Aspergillus fumigatus	47.23	1.00e-158	551.00
IUUC-Ani-009365	Aspergillus nidulans	46.31	6.00e-163	565.00
IUUC-Ang-009796	Aspergillus niger	47.70	4.00e-164	569.00
IUUC-Aor-010015	Aspergillus oryzae	48.47	7.00e-171	592.00
IUUC-Ate-010537	Aspergillus terreus	45.77	1.00e-167	581.00
IUUC-Ame-011767	Astyanax mexicanus	55.05	1.00e-73	266.00
IUUC-Bgr-012286	Blumeria graminis	45.56	3.00e-165	573.00
IUUC-Bta-013569	Bos taurus	42.18	2.00e-138	484.00
IUUC-Bci-013820	Botrytis cinerea	45.66	3.00e-152	530.00
IUUC-Bdi-014477	Brachypodium distachyon	40.00	2.00e-131	460.00
IUUC-Bol-016099	Brassica oleracea	41.20	2.00e-135	474.00
IUUC-Bra-017174	Brassica rapa	41.20	9.00e-136	476.00
IUUC-Cel-018201	Caenorhabditis elegans	37.62	4.00e-114	403.00
IUUC-Cja-019009	Callithrix jacchus	39.24	2.00e-73	268.00
IUUC-Cfa-020173	Canis familiaris	38.88	9.00e-126	442.00
IUUC-Cpo-021796	Cavia porcellus	42.02	4.00e-137	479.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	42.81	4.00e-132	462.00
IUUC-Csa-023440	Chlorocebus sabaeus	42.34	2.00e-142	497.00
IUUC-Cin-025782	Ciona intestinalis	40.72	8.00e-143	498.00
IUUC-Csv-026352	Ciona savignyi	41.13	1.00e-141	494.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	44.18	4.00e-132	463.00
IUUC-Cne-027004	Cryptococcus neoformans	45.80	2.00e-168	584.00
IUUC-Cme-027242	Cyanidioschyzon merolae	36.83	6.00e-115	405.00
IUUC-Dre-028658	Danio rerio	41.81	4.00e-144	503.00
IUUC-Dno-028883	Dasypus novemcinctus	41.84	2.00e-139	488.00
IUUC-Dor-031031	Dipodomys ordii	40.94	1.00e-141	494.00
IUUC-Dse-031443	Dothistroma septosporum	44.72	3.00e-155	540.00
IUUC-Dme-031786	Drosophila melanogaster	42.25	7.00e-143	499.00
IUUC-Eca-033677	Equus caballus	42.34	2.00e-137	481.00
IUUC-Eeu-035310	Erinaceus europaeus	37.26	6.00e-98	349.00
IUUC-Fca-035888	Felis catus	41.40	1.00e-134	471.00
IUUC-Fal-037438	Ficedula albicollis	44.40	3.00e-123	433.00
IUUC-Fox-037973	Fusarium oxysporum	46.36	4.00e-169	586.00
IUUC-Fso-038187	Fusarium solani	46.81	3.00e-169	586.00
IUUC-Gmo-039114	Gadus morhua	41.26	5.00e-135	472.00
IUUC-Ggr-039746	Gaeumannomyces graminis	47.35	1.00e-175	608.00
IUUC-Gga-040631	Gallus gallus	41.39	1.00e-82	297.00
IUUC-Gac-042582	Gasterosteus aculeatus	42.50	1.00e-135	474.00
IUUC-Gma-044215	Glycine max	40.50	6.00e-133	466.00
IUUC-Ggo-045587	Gorilla gorilla	41.86	8.00e-142	495.00
IUUC-Hsa-046319	Homo sapiens	42.18	2.00e-142	497.00
IUUC-Hvu-047526	Hordeum vulgare	40.43	6.00e-125	439.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	41.37	3.00e-138	483.00
IUUC-Kpa-049221	Komagataella pastoris	45.40	1.00e-172	597.00
IUUC-Lch-049640	Latimeria chalumnae	42.13	9.00e-149	518.00
IUUC-Lpe-051135	Leersia perrieri	38.18	1.00e-113	401.00
IUUC-Loc-051930	Lepisosteus oculatus	42.06	6.00e-149	518.00
IUUC-Lma-053290	Leptosphaeria maculans	44.97	6.00e-156	542.00
IUUC-Laf-053903	Loxodonta africana	37.68	4.00e-114	403.00
IUUC-Mcc-055471	Macaca mulatta	42.50	8.00e-143	498.00
IUUC-Meu-056190	Macropus eugenii	40.94	2.00e-137	480.00
IUUC-Mor-057135	Magnaporthe oryzae	47.55	5.00e-164	569.00
IUUC-Mpo-057475	Magnaporthe poae	46.99	2.00e-164	570.00
IUUC-Mtr-058689	Medicago truncatula	37.74	1.00e-117	415.00
IUUC-Mla-059149	Melampsora laricipopulina	44.10	1.00e-162	564.00
IUUC-Mga-059645	Meleagris gallopavo	37.36	1.00e-48	184.00
IUUC-Mvi-060485	Microbotryum violaceum	43.86	9.00e-145	506.00
IUUC-Mmr-061674	Microcebus murinus	40.66	1.00e-134	471.00
IUUC-Mdo-062973	Monodelphis domestica	40.73	1.00e-141	494.00
IUUC-Mmu-064180	Mus musculus	40.87	4.00e-139	486.00
IUUC-Mac-064535	Musa acuminata	37.97	2.00e-78	285.00
IUUC-Mpu-066406	Mustela putorius furo	41.86	6.00e-138	482.00
IUUC-Mlu-067795	Myotis lucifugus	42.02	1.00e-129	454.00
IUUC-Nfi-068516	Neosartorya fischeri	45.78	2.00e-149	521.00
IUUC-Ncr-068767	Neurospora crassa	45.88	9.00e-149	518.00
IUUC-Opr-071084	Ochotona princeps	43.02	2.00e-52	197.00
IUUC-Ont-071614	Oreochromis niloticus	42.45	2.00e-147	513.00
IUUC-Oba-075980	Oryza barthii	40.17	2.00e-68	251.00
IUUC-Obr-076799	Oryza brachyantha	40.16	2.00e-127	447.00
IUUC-Ogl-077134	Oryza glaberrima	39.66	7.00e-123	432.00
IUUC-Ogu-078655	Oryza glumaepatula	38.09	1.00e-116	412.00
IUUC-Oin-079654	Oryza indica	39.66	2.00e-122	431.00
IUUC-Olo-080706	Oryza longistaminata	40.17	8.00e-68	249.00
IUUC-Ome-081716	Oryza meridionalis	39.60	7.00e-67	246.00
IUUC-Oni-082508	Oryza nivara	37.97	1.00e-113	401.00
IUUC-Opu-083707	Oryza punctata	40.17	1.00e-67	248.00
IUUC-Oru-084453	Oryza rufipogon	40.17	8.00e-68	249.00
IUUC-Osa-085811	Oryza sativa	39.50	2.00e-122	431.00
IUUC-Ola-087361	Oryzias latipes	42.36	3.00e-146	510.00
IUUC-Oga-088015	Otolemur garnettii	41.55	7.00e-143	498.00
IUUC-Oar-090058	Ovis aries	55.09	3.00e-56	210.00
IUUC-Ptr-090631	Pan troglodytes	41.56	2.00e-49	187.00
IUUC-Pan-092306	Papio anubis	42.43	2.00e-141	494.00
IUUC-Pma-094622	Petromyzon marinus	42.45	2.00e-148	517.00
IUUC-Pno-094794	Phaeosphaeria nodorum	41.04	2.00e-146	510.00
IUUC-Ppa-095528	Physcomitrella patens	36.67	5.00e-75	273.00
IUUC-Pfo-096682	Poecilia formosa	41.86	2.00e-146	510.00
IUUC-Pab-097939	Pongo abelii	43.19	8.00e-137	478.00
IUUC-Pop-099043	Populus trichocarpa	41.11	2.00e-127	447.00
IUUC-Pca-100333	Procavia capensis	40.51	1.00e-136	478.00
IUUC-Ppe-102078	Prunus persica	39.81	1.00e-126	444.00
IUUC-Pgr-103525	Puccinia graminis	45.01	3.00e-154	536.00
IUUC-Ptt-103929	Puccinia triticina	44.76	4.00e-149	520.00
IUUC-Pte-104029	Pyrenophora teres	46.01	9.00e-168	582.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	45.54	1.00e-167	581.00
IUUC-Rno-105248	Rattus norvegicus	41.80	3.00e-140	489.00
IUUC-Sce-106381	Saccharomyces cerevisiae	45.34	4.00e-179	619.00
IUUC-Sha-106519	Sarcophilus harrisii	40.41	6.00e-139	485.00
IUUC-Spo-108071	Schizosaccharomyces pombe	66.06	0.00e+00	871.00
IUUC-Smo-109604	Selaginella moellendorffii	41.70	3.00e-128	450.00
IUUC-Sit-109742	Setaria italica	40.00	5.00e-130	456.00
IUUC-Sly-110970	Solanum lycopersicum	42.37	1.00e-68	251.00
IUUC-Stu-112593	Solanum tuberosum	40.00	4.00e-129	453.00
IUUC-Sar-113123	Sorex araneus	50.48	1.00e-63	234.00
IUUC-Sbi-113945	Sorghum bicolor	39.75	6.00e-129	452.00
IUUC-Sre-115188	Sporisorium reilianum	40.63	3.00e-148	516.00
IUUC-Ssc-115352	Sus scrofa	41.77	2.00e-142	497.00
IUUC-Tru-117685	Takifugu rubripes	42.74	2.00e-149	520.00
IUUC-Tni-119982	Tetraodon nigroviridis	43.40	4.00e-142	496.00
IUUC-Tca-121664	Theobroma cacao	40.21	5.00e-132	462.00
IUUC-Tre-122229	Trichoderma reesei	46.41	4.00e-152	529.00
IUUC-Tvi-122576	Trichoderma virens	46.54	2.00e-154	537.00
IUUC-Tae-125703	Triticum aestivum	39.97	8.00e-121	425.00
IUUC-Tur-126781	Triticum urartu	38.86	3.00e-102	363.00
IUUC-Tme-127080	Tuber melanosporum	51.12	0.00e+00	673.00
IUUC-Ttr-128514	Tursiops truncatus	37.53	2.00e-78	284.00
IUUC-Uma-129556	Ustilago maydis	41.63	4.00e-147	513.00
IUUC-Vda-129715	Verticillium dahliae	46.89	2.00e-164	570.00
IUUC-Vvi-131211	Vitis vinifera	40.36	5.00e-124	436.00
IUUC-Xma-133883	Xiphophorus maculatus	42.05	3.00e-142	496.00
IUUC-Yli-134438	Yarrowia lipolytica	45.07	6.00e-166	575.00
IUUC-Zma-135341	Zea mays	36.44	1.00e-120	425.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence