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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-006861
UUCD1 version UUC-ArT-01452
Ensembl Protein ID AT1G23980.1
UniProt Accession Q8GW38; Q9LR95; ATL47_ARATH
Genbank Protein ID AAF87153.1; AEE30463.1; BAC43674.1; AAQ55274.1
Protein Name RING-H2 finger protein ATL47; RING-type E3 ubiquitin transferase ATL47
Genbank Nucleotide ID AC002423; CP002684; AK119101; BT010323
Gene Name ATL47; At1g23980; T23E23.15
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G23980 AT1G23980.1 AT1G23980.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
Status Reviewed
Details
Family Domain References (PMIDs)
E3 activity/RING/RING RING 16339806
Classification
Family E-value Score Start End
E3 activity/RING/RING 8.50e-08 33.5 144 186
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
    Ca+Cl++f +d +++lp C H+fh dC+ w + +CPlCr
   Q: 144 CAVCLCEFseDDKLRLLPnCSHAFHIDCIDTW------LLSNSTCPLCR 186
    ********88666*******************......888889****8 PP
   

Organism Arabidopsis thaliana
Protein Sequence
(Fasta)
MSERRIHYSQ LKNDNLNQIS PSSAPSPITL NHQLTDSSSS SSSGGNNRIS PIILFIIVLL 60
SVIFFICSIL HLLVRYYLKK KRSNLSSSPN ESNQNPEFSD SDTYQRQLQQ LFHLHDSGLD 120
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Protein Fasta Sequence



>IUUC-Ath-006861|E3,RING|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
ATCAAAAAAA AAAAATGTCT GAGAGGAGGA TTCATTATTC CCAGCTCAAA AACGACAACT 60
TGAATCAAAT CTCGCCTTCT TCTGCTCCTT CTCCAATCAC CCTGAATCAT CAATTAACCG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-006861|E3,RING|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG ath:AT1G23980
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aly-006330 Arabidopsis lyrata 80.83 4.00e-128 450.00
IUUC-Ago-007872 Ashbya gossypii 34.48 7.00e-11 59.30
IUUC-Bol-015919 Brassica oleracea 73.26 2.00e-117 414.00
IUUC-Bra-017741 Brassica rapa 72.30 6.00e-115 406.00
IUUC-Cfa-020202 Canis familiaris 41.90 3.00e-17 82.80
IUUC-Cre-022755 Chlamydomonas reinhardtii 55.81 3.00e-13 65.10
IUUC-Gma-042866 Glycine max 59.34 2.00e-78 285.00
IUUC-Mtr-057863 Medicago truncatula 61.85 6.00e-72 263.00
IUUC-Mac-064534 Musa acuminata 50.00 2.00e-59 221.00
IUUC-Mlu-068129 Myotis lucifugus 34.65 4.00e-16 79.30
IUUC-Ppa-095197 Physcomitrella patens 49.32 4.00e-33 135.00
IUUC-Smo-109112 Selaginella moellendorffii 77.27 5.00e-29 117.00
Created Date 25-Jun-2017

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