iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0016s00390	POPTR_0016s00390.2	POPTR_0016s00390.2
POPTR_0016s00390	POPTR_0016s00390.1	POPTR_0016s00390.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-08	36.3	421	455

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtcl...af.sdtllvsGsdDgtikvWDlrtg 33
           H ++vt l   ++ + t+l+s+s Dg++k+W+ r+ 
   Q: 421  HDGEVTELsmcQWmT-TRLASASTDGVVKIWEDRKA 455
           777777752225655.99*************86665 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MASPGNPNQQ QQGGGGIIGG GGGFDLNKLF KPSSSNPMNM MQPHIQQQLQ QQQGPPPSPN 60
SNTTTSGNLT TSPSFPLPSS SPPYLTPSSS YPPPTGPYHP FHHPHYLSPY PPPPPPQQLH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCCTTCGAT CCTTCTCTCT TTCTTCTCCA AATTCTCACT CTATCGCTAC CCTAGTTTGG 60
GACGACAGAA TAGAGAGAGA AGAGAGGTGG AGAAAGAAAG GTGTGTTGTC TTTCTGATCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032401--EDC4_WD40
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16529--Ge1_WD40

SMART

SM00320--WD40

Gene Ontology

GO:0000932--C:P-body
GO:0031087--P:deadenylation-independent decapping of nuclear-transcribed mRNA

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002815	Amborella trichopoda	70.41	0.00e+00	670.00
IUUC-Loc-051778	Lepisosteus oculatus	25.93	1.00e-21	98.60
IUUC-Mtr-057889	Medicago truncatula	62.60	0.00e+00	763.00
IUUC-Mac-065564	Musa acuminata	66.12	0.00e+00	689.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence