iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Aly-006220

Ensembl Protein ID

fgenesh1_pg.C_scaffold_4001872

UniProt Accession

D7LKF0; D7LKF0_ARALL

Genbank Protein ID

EFH57801.1

Protein Name

WD-40 repeat family protein

Genbank Nucleotide ID

GL348716

Gene Name

ARALYDRAFT_345530

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh1_pg.C_scaffold_4001872	fgenesh1_pg.C_scaffold_4001872	fgenesh1_pg.C_scaffold_4001872

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.20e-29	100.4	512	549
UBD/Beta-Prp	6.00e-40	138.0	499	734

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH d + +l++  s  ll+s+s D+t+++WDl t ++lk
   Q: 512  GHLDAILDLSWskS-QLLLSSSMDKTVRLWDLETKTCLK 549
           8**********643.9******************99986 PP

UBD/Beta-Prp

   S: 36   vwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp.sgdklvsGs 113
           v+++++ k + sl+gh +++ ++++s+++ +l+++s D+t+++wdl+t +c+  +  h+d+v++++fsp + ++++sGs
   Q: 499  VFSFSD-KPVCSLKGHLDAILDLSWSKSQ-LLLSSSMDKTVRLWDLETKTCLKLFA-HNDYVTCIQFSPvDENYFLSGS 574
           556666.44689****************8.***********************999.************888******* PP
   S: 114  hdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl........tgghtdsvy 184
            d  ir+w ++ + ++e   s  +++v+ +++ pdg+    Gs  +++r +d +  kl +t         +++ +++++
   Q: 575  LDAKIRIWSIQDRHVVE--WSDLHEMVTAACYTPDGQGALIGSHKGICRAYDTEDCKLSQTSqidvqsnkKSQAKRKIT 651
           ****************9..5555669***************************888888888888888997779***** PP
   S: 185  slsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs..pnderlvsgssDgsiriW..dlrsgdllk 258
           s +f++    e++  s d+++++ d   +e++++++g +++ +++ +s  +++++++++s+D ++++W  d +    + 
   Q: 652  SFQFSPVNpSEVLVTSADSRIRILDG--SEVIHKFKGFRNTCSQLSASysQDGKYIICASEDSQVYLWknDFQRTRSTL 728
           *****976699*************98..678*************999999******************99999888888 PP
   S: 259  tlqlhn 264
           t+q h+
   Q: 729  TTQSHE 734
           888877 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MMEDGNKLDR KKTMTMNWEG LGDFEDEDDD RFFETHDRLS SALAFDMSAA SSSDEDEDFD 60
DCRLSFSSAV SSLTTASRKF RTPAMSPDYD IWMAAPGSIS ERRRRLLHGM GLVSNKDMVS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGATGGAAG ATGGGAACAA ATTGGATCGG AAGAAGACAA TGACGATGAA CTGGGAAGGA 60
TTAGGAGATT TTGAAGATGA AGATGATGAT AGATTCTTCG AAACTCATGA TCGTCTCTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG

aly:ARALYDRAFT_345530

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007022	Arabidopsis thaliana	96.27	0.00e+00	1570.00
IUUC-Acl-008290	Aspergillus clavatus	28.98	2.00e-42	166.00
IUUC-Bol-015370	Brassica oleracea	77.51	0.00e+00	1199.00
IUUC-Bra-017887	Brassica rapa	81.71	0.00e+00	1187.00
IUUC-Fox-037744	Fusarium oxysporum	44.75	3.00e-36	144.00
IUUC-Gma-042939	Glycine max	50.99	0.00e+00	781.00
IUUC-Mtr-057965	Medicago truncatula	51.50	0.00e+00	791.00
IUUC-Mac-065405	Musa acuminata	47.53	5.00e-154	537.00
IUUC-Nfi-068449	Neosartorya fischeri	27.42	4.00e-36	146.00
IUUC-Ogl-077609	Oryza glaberrima	40.69	2.00e-121	429.00
IUUC-Ogu-078960	Oryza glumaepatula	40.69	1.00e-121	430.00
IUUC-Oin-079641	Oryza indica	40.83	1.00e-121	430.00
IUUC-Ppa-095184	Physcomitrella patens	35.88	3.00e-104	372.00
IUUC-Pop-099373	Populus trichocarpa	56.11	0.00e+00	936.00
IUUC-Ppe-101329	Prunus persica	52.23	0.00e+00	831.00
IUUC-Sly-111902	Solanum lycopersicum	50.83	0.00e+00	771.00
IUUC-Stu-112158	Solanum tuberosum	50.70	0.00e+00	727.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence