iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099373

Ensembl Protein ID

POPTR_0006s08480.1

UniProt Accession

B9HBL0; B9HBL0_POPTR

Genbank Protein ID

EEE92576.1

Protein Name

WD-40 repeat family protein

Genbank Nucleotide ID

CM000342

Gene Name

POPTRDRAFT_801931; POPTR_0006s08480g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0006s08480	POPTR_0006s08480.1	POPTR_0006s08480.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.30e-29	101.3	514	551
UBD/Beta-Prp	1.50e-40	140.4	402	722

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
           gH d+v +l++  + ll+s+s D+t+++WD+ t  +lk
   Q: 514  GHLDDVLDLSWsRSQLLLSSSMDKTVRLWDMETKSCLK 551
           8**********8449****************9999986 PP

UBD/Beta-Prp

   S: 44   llrslsgheaevtavkfspdgkilvtgseDrtikvwdls.................................................... 82
           l ++++ h + +++++fs+d+ +l++g+eDr+i++w+++                                                    
   Q: 402  LCQEIQAHRGSIWTIRFSSDARFLASGGEDRIIHIWEVQecevmslhdgnltplhpslcsstpslgevtpmsserkkkwkasssrkgnpip 492
           4788999*****************************99999999999******************************************** PP
   S: 83   ............tgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrt 160
                       + k+v +++gh d+vl+ls+s+ ++ l+s s d+t+r+wd+et++cl+  l  h++ v+c++++p + ++++sGslD +
   Q: 493  eyvhvpetvfslSEKPVCSFTGHLDDVLDLSWSR-SQLLLSSSMDKTVRLWDMETKSCLK--LFAHNDYVTCIQFNPMDeRYFISGSLDAK 580
           **********************************.9***********************9..999************************** PP
   S: 161  vrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlq.....tgecvrtlnght...dnvksvrfs.pnderlvsgss 242
           vr+W+++  +l+ ++t   +++v+ + ++++g+  + gs++g+ ++++ +     + ecv+ +n  +   + ++  +fs  n   ++++s+
   Q: 581  VRIWSIPDRQLV-DWTD-LHEMVTAVCYTPDGQGALVGSHKGSCRMYNAEdcklsQMECVDVQNKKRsqaKKITGFQFSpGNPSEVLVTSA 669
           ******887776.6877.899***************************999999999999999998844456666778876778899999* PP
   S: 243  DgsiriWdlrsgdllktlqlhn..ssvisvavlsfgdnvlvlgsedskvniwklkk 296
           D  +ri  l+ +++++++ + +  +s is ++ s +++++v++seds v iwk ++
   Q: 670  DSRVRI--LDGSEVVHKFRGFRniNSQISASF-SSDGKYVVSASEDSHVYIWKREE 722
           ******..56************6555555555.888*****************876 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MERKRTLTMN WDALGDHDHD DEDRFFETYD RLSSVVPIDL NSSGSDEDDD FDDTRMSFAS 60
AISSLSTSEF RNYAAAAATL SPKYSASVSP DYDIWMAAPG SITERRKRLL QGMGLNSNKE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGCGAA AGAGAACGCT TACCATGAAC TGGGATGCCC TGGGCGATCA TGATCATGAT 60
GACGAAGACC GTTTCTTTGA AACCTACGAC CGCCTCTCCT CCGTTGTTCC TATCGACTTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG

pop:POPTR_0006s08480g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002683	Amborella trichopoda	62.73	4.00e-132	465.00
IUUC-Aly-006220	Arabidopsis lyrata	58.07	0.00e+00	973.00
IUUC-Ath-007022	Arabidopsis thaliana	58.54	0.00e+00	975.00
IUUC-Ago-007814	Ashbya gossypii	33.73	3.00e-37	149.00
IUUC-Bol-015370	Brassica oleracea	54.19	0.00e+00	867.00
IUUC-Bra-017887	Brassica rapa	58.64	0.00e+00	889.00
IUUC-Dme-032135	Drosophila melanogaster	31.61	9.00e-56	211.00
IUUC-Fox-037744	Fusarium oxysporum	42.39	6.00e-37	147.00
IUUC-Gma-042939	Glycine max	54.27	0.00e+00	914.00
IUUC-Hvu-047791	Hordeum vulgare	48.61	1.00e-119	424.00
IUUC-Meu-056678	Macropus eugenii	28.79	3.00e-35	143.00
IUUC-Mtr-057965	Medicago truncatula	55.11	0.00e+00	883.00
IUUC-Mla-059075	Melampsora laricipopulina	34.51	3.00e-27	116.00
IUUC-Mac-064810	Musa acuminata	54.48	2.00e-152	532.00
IUUC-Ogl-077530	Oryza glaberrima	50.50	1.00e-126	446.00
IUUC-Ogu-078960	Oryza glumaepatula	40.25	3.00e-126	445.00
IUUC-Oin-080074	Oryza indica	50.20	3.00e-126	445.00
IUUC-Olo-080681	Oryza longistaminata	48.32	1.00e-102	367.00
IUUC-Ome-081463	Oryza meridionalis	38.68	5.00e-120	425.00
IUUC-Opu-083807	Oryza punctata	43.87	2.00e-123	436.00
IUUC-Oru-084429	Oryza rufipogon	47.90	1.00e-121	431.00
IUUC-Osa-085616	Oryza sativa	50.20	2.00e-126	445.00
IUUC-Olu-087651	Ostreococcus lucimarinus	41.52	8.00e-51	192.00
IUUC-Oga-088623	Otolemur garnettii	30.41	2.00e-52	200.00
IUUC-Ppa-095184	Physcomitrella patens	41.88	2.00e-105	377.00
IUUC-Pca-100159	Procavia capensis	29.55	1.00e-35	145.00
IUUC-Ppe-101329	Prunus persica	58.41	0.00e+00	934.00
IUUC-Smo-108748	Selaginella moellendorffii	40.96	4.00e-101	362.00
IUUC-Sit-110115	Setaria italica	50.30	9.00e-127	447.00
IUUC-Sly-111902	Solanum lycopersicum	57.16	0.00e+00	884.00
IUUC-Stu-112158	Solanum tuberosum	53.66	0.00e+00	805.00
IUUC-Tni-120013	Tetraodon nigroviridis	35.09	5.00e-49	189.00
IUUC-Tca-121856	Theobroma cacao	59.23	0.00e+00	992.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence