iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006766

UUCD1 version

UUC-ArT-00868

Ensembl Protein ID

AT5G05280.1

UniProt Accession

Q9FLC6; ATL73_ARATH

Genbank Protein ID

BAB09971.1; AED90850.1; AT5G05280.1

Protein Name

RING-H2 finger protein ATL73; RING-type E3 ubiquitin transferase ATL73

Genbank Nucleotide ID

AB010692; CP002688; BX830198

Gene Name

ATL73; At5g05280; K18I23.8

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G05280	AT5G05280.1	AT5G05280.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	23347376

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	3.50e-08	34.7	113	155

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl df   ++ ++vlp C+H fh +C+  w         + +CP+Cr
   Q: 113  CLICLGDFvegET-VRVLPkCNHGFHVKCIDTW------LLSHSSCPTCR 155
           ********77444.*******************......888999****8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MARFLLATQA TPTISATDAN PRTLGDSVSN NKNIASMDTH MVIILAALLC ALICALGINS 60
VLRCVLRCTR RFTPNEDPVD TNANVAKGIK KRALKVIPVD SYSPELKMKA TECLICLGDF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTATTACTAG CCTATTTCCT ACTCTTATAG TACAACTTAT TTCCTTATGT GTAAAACCCA 60
AAGAAGAACT TGTATAAAGA AACAGATCAT AAAGGATTTG AGCTTTGATT TTTCTCCATG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0732--Signal
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0009901--P:anther dehiscence
GO:0009555--P:pollen development
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0016567--P:protein ubiquitination
GO:0080141--P:regulation of jasmonic acid biosynthetic process
GO:0048443--P:stamen development

KEGG

ath:AT5G05280

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005951	Arabidopsis lyrata	95.51	1.00e-87	314.00
IUUC-Bol-015607	Brassica oleracea	78.29	2.00e-65	241.00
IUUC-Mtr-058744	Medicago truncatula	54.49	4.00e-35	140.00
IUUC-Ppa-095980	Physcomitrella patens	44.44	1.00e-24	105.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence