iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-098790

Ensembl Protein ID

POPTR_0007s03490.1

UniProt Accession

B9HED4; B9HED4_POPTR

Genbank Protein ID

EEE90326.2

Protein Name

Ubiquitin family protein

Genbank Nucleotide ID

CM000343

Gene Name

POPTR_0007s03490g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0007s03490	POPTR_0007s03490.1	POPTR_0007s03490.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_PIM	1.00e-13	52.1	606	679

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvp.peqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           mk+ +k l gk  +++v+ +++++++K+k +k+ +++  e  kL y Gk+L+D+++Ls+++++ +s++hlv +k
   Q: 606  MKIILKSLGGKGSKVHVDAEENISSVKAKASKKLDFKpSETVKLFYLGKELEDHKSLSAHNVQPNSLLHLVRTK 679
           89*********************************6538899*****************************876 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MGGGGYESGS ASGDDDDEEY DEVGGNHFLG FMFGNVDNSG DLDADYLDED AKEHLAALAD 60
KLGSSLTEID LSVKSPQTST DAAEQDYDAK AEDAVDYEDF DEQYEGPEIQ AVSEEDYLLS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTGAATGCA AAATCCACTC CGTCGTCGCT ATCCCGGTCG GAGATGATCG TTGTTCACCA 60
CCAGGATATG AATCAATCCT CTTAAATTAC CAGGTAACAT CTCAACCCAG CCACTCGAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001487--Bromodomain
IPR009067--TAF_II_230-bd
IPR022591--TFIID_sub1_DUF3591
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS50014--BROMODOMAIN_2
PS50053--UBIQUITIN_2

Pfam

PF00439--Bromodomain
PF12157--DUF3591
PF09247--TBP-binding
PF00240--ubiquitin

PRINTS

PR00503--BROMODOMAIN

SMART

SM00297--BROMO
SM00213--UBQ

Gene Ontology

GO:0005669--C:transcription factor TFIID complex
GO:0004402--F:histone acetyltransferase activity
GO:0001129--F:RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0043565--F:sequence-specific DNA binding
GO:0017025--F:TBP-class protein binding
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter

KEGG

pop:POPTR_0007s03490g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003084	Amborella trichopoda	54.30	0.00e+00	1296.00
IUUC-Aly-005900	Arabidopsis lyrata	54.41	0.00e+00	1694.00
IUUC-Gmo-039453	Gadus morhua	40.91	7.00e-10	60.50
IUUC-Ppa-095489	Physcomitrella patens	51.87	0.00e+00	884.00
IUUC-Ppe-101917	Prunus persica	63.26	0.00e+00	1728.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence