iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Mtr-057843

Ensembl Protein ID

AES61911

UniProt Accession

D1FP53; LIN_MEDTR

Genbank Protein ID

ACL14419.1; ACL14420.1

Protein Name

Putative E3 ubiquitin-protein ligase LIN; RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

EU926660; EU926661

Gene Name

LIN

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
MTR_1g090320	AES61911	AES61911

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	9.10e-26	91.2	515	587
E3 adaptor/Cullin RING/DCX/DWD	1.80e-09	38.9	1211	1238

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedl.vPnltlrrliqawceens 73
           +p++f+CpI++++++dPv+l++G+ty+r++I++wl +g++tcP+trq l+ + l + n++l+rli +w e+n 
   Q: 515  PPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQALSANILpKTNYVLKRLIVSWKEQNP 587
           79***************************************************99**************9985 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 3    tdsvtclaf.sdtllvsGsdDgtikvWDl 30
           +++v +l++ + + ++sG  DgtikvWD 
   Q: 1211 NGEVLSLHYlN-GQVLSGHADGTIKVWDA 1238
           578999**966.99**************5 PP

Organism

Medicago truncatula

Functional Description
(View)

Putative E3 ubiquitin ligase involved in the rhizobial infection process. Plays an important role in the early steps of infection thread formation and in growth and differentiation of nodules.

Protein Sequence
(Fasta)

MPMSGNFRFM MDQKDIVRFL TTTIDSFIQD RLINKEQRTQ HKDQCAERLA AEDGNTDKET 60
EVEYSDQAVL ANLDWGIEAL EEAINTYNME TKLARLDYAE KMLQVCAMLN PKQKTAGVPN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AATAATCTAT GTGCCTTAGT CCGCGCTTTG TTTTGCTTCT GTCATCACAT TAACATATAT 60
GCCGGCATAG CTATTTCCAT CCTTAGTGTT ACTAATTTTG TTTTTCTATA CCATATGCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0536--Nodulation
KW-0677--Repeat
KW-0808--Transferase
KW-0853--WD repeat

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04564--U-box
PF00400--WD40

SMART

SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity
GO:0009877--P:nodulation

KEGG

mtr:MTR_1g090320

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Gma-042764	Glycine max	81.38	0.00e+00	2439.00
IUUC-Pop-099454	Populus trichocarpa	60.81	0.00e+00	1783.00
IUUC-Ppe-101141	Prunus persica	66.69	0.00e+00	1975.00
IUUC-Smo-109666	Selaginella moellendorffii	36.38	2.00e-164	573.00
IUUC-Sly-111208	Solanum lycopersicum	58.32	0.00e+00	1717.00
IUUC-Stu-112377	Solanum tuberosum	57.53	0.00e+00	1662.00
IUUC-Tca-121527	Theobroma cacao	65.09	0.00e+00	1892.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence