iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Stu-112377

Ensembl Protein ID

PGSC0003DMT400065133

UniProt Accession

M1CDG4; M1CDG4_SOLTU

Protein Name

RING-type E3 ubiquitin transferase

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PGSC0003DMG400025317	PGSC0003DMT400065133	PGSC0003DMT400065133

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	6.60e-26	91.4	505	577
E3 adaptor/Cullin RING/DCX/DWD	2.20e-09	38.5	1243	1272

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedl.vPnltlrrliqawceens 73
           +p++f+CpI++++++dPv+l++G+ty+ ++I++w+++g++tcP+trq+l+  +l + n++l+rli +w+e++ 
   Q: 505  PPKDFVCPITGQIFNDPVTLETGQTYEGKAIQEWIKRGNTTCPITRQSLSAATLpKTNYVLKRLITSWREQHP 577
           699*******************************************************************996 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWD 29
           H+  vtcl   s+ + l sGs D ti+vW 
   Q: 1243 HSKAVTCLYVsSSgDKLYSGSLDRTIRVWA 1272
           9999****669556***************7 PP

Organism

Solanum tuberosum

Protein Sequence
(Fasta)

MAGNYRFEMD QEDIVRSLIT SVGSFIQDRL IDKEQRTSHK EQCAERLAAE DGSSDKDTEV 60
RYSDQAVLAN LDWGIDALEE AINTSNIETK MARLDYAEKM LQVCAMLDSS QKTAGVPNFY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTGGAA ATTATAGATT TGAAATGGAT CAGGAAGATA TAGTTAGGTC CTTGATCACT 60
TCTGTAGGAA GTTTCATTCA AGACAGGCTG ATTGACAAGG AACAAAGAAC GTCGCATAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04564--U-box
PF00400--WD40

SMART

SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Gmo-038629	Gadus morhua	33.73	6.00e-11	60.80
IUUC-Gma-042764	Glycine max	59.09	0.00e+00	1706.00
IUUC-Mtr-057843	Medicago truncatula	57.37	0.00e+00	1635.00
IUUC-Pop-099454	Populus trichocarpa	58.75	0.00e+00	1669.00
IUUC-Ppe-101141	Prunus persica	60.48	0.00e+00	1793.00
IUUC-Sly-111208	Solanum lycopersicum	93.99	0.00e+00	2727.00
IUUC-Tca-121527	Theobroma cacao	61.72	0.00e+00	1760.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence