iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Stu-111946

Ensembl Protein ID

PGSC0003DMT400013055

UniProt Accession

M1A284; M1A284_SOLTU

Protein Name

RING-type E3 ubiquitin transferase

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PGSC0003DMG400005092	PGSC0003DMT400013055	PGSC0003DMT400013055

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	5.60e-26	91.6	352	425
E3 adaptor/Cullin RING/DCX/DWD	9.40e-08	33.3	1056	1078

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedl.vPnltlrrliqawceenss 74
           +p++f+CpI+  + +dPv+l++G+ty+r++I++wl+ g+ tcP+trq+l++++l + n++l+rli +w e+ ++
   Q: 352  PPKDFVCPITTHVLEDPVTLETGQTYERKAIQEWLEMGNATCPITRQKLHSTQLpKTNYVLKRLIASWQEKDQN 425
           79******************************************************************998765 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 12   sdtllvsGsdDgtikvWDlrtgv 34
           s+  l sGs D t++vW++ +  
   Q: 1056 SGEKLYSGSLDRTVRVWSIQDEG 1078
           45889************987765 PP

Organism

Solanum tuberosum

Protein Sequence
(Fasta)

MASESILRHT SVFLSEILAH SELRHWLFSL FHQSADQSVA IETIENAAST SNYSSLKLAA 60
EKILVSLDSE NTFSSFLLSL VYTLLHKPVD AALSLLHVFY TDPFIARVEI APLVFEQLFL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGTACTTTTA GCTCCACTTC ACCAAAGTCA AAAAGACTTT AGTTCTATAG CTCCAAAAAC 60
TTTTGTAAAA CCATTTTCGT TTCACATGGC TTCAGAGAGC ATTCTCCGCC ACACCAGCGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase
KW-0853--WD repeat

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04564--U-box
PF00400--WD40

SMART

SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000289	Aegilops tauschii	50.50	0.00e+00	912.00
IUUC-Atr-002936	Amborella trichopoda	51.82	0.00e+00	877.00
IUUC-Bdi-014680	Brachypodium distachyon	49.90	0.00e+00	922.00
IUUC-Gma-044256	Glycine max	51.77	0.00e+00	1274.00
IUUC-Hvu-047711	Hordeum vulgare	48.61	4.00e-98	350.00
IUUC-Lpe-051224	Leersia perrieri	48.77	0.00e+00	768.00
IUUC-Mtr-058452	Medicago truncatula	55.79	0.00e+00	1270.00
IUUC-Mac-064685	Musa acuminata	50.80	0.00e+00	1136.00
IUUC-Obr-076347	Oryza brachyantha	44.88	0.00e+00	912.00
IUUC-Ogl-077695	Oryza glaberrima	42.89	0.00e+00	818.00
IUUC-Ogu-078873	Oryza glumaepatula	44.80	0.00e+00	842.00
IUUC-Oin-079745	Oryza indica	51.94	4.00e-136	477.00
IUUC-Olo-081050	Oryza longistaminata	48.88	8.00e-131	460.00
IUUC-Ome-081604	Oryza meridionalis	43.49	0.00e+00	840.00
IUUC-Oni-082155	Oryza nivara	43.70	0.00e+00	816.00
IUUC-Opu-083775	Oryza punctata	47.13	0.00e+00	714.00
IUUC-Oru-084628	Oryza rufipogon	42.43	0.00e+00	805.00
IUUC-Osa-086224	Oryza sativa	47.59	2.00e-79	288.00
IUUC-Pop-099122	Populus trichocarpa	61.70	0.00e+00	941.00
IUUC-Ppe-101249	Prunus persica	57.42	0.00e+00	1258.00
IUUC-Smo-109545	Selaginella moellendorffii	32.84	2.00e-164	572.00
IUUC-Sit-110152	Setaria italica	52.76	0.00e+00	956.00
IUUC-Sly-111919	Solanum lycopersicum	88.63	0.00e+00	1966.00
IUUC-Sbi-114464	Sorghum bicolor	50.41	0.00e+00	822.00
IUUC-Tca-121369	Theobroma cacao	58.09	0.00e+00	1385.00
IUUC-Tae-123295	Triticum aestivum	51.24	0.00e+00	927.00
IUUC-Tur-126163	Triticum urartu	48.36	0.00e+00	748.00
IUUC-Vvi-131144	Vitis vinifera	62.15	0.00e+00	1362.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence