iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.5__1292__AT3G49400.1	fgenesh2_kg.5__1292__AT3G49400.1	fgenesh2_kg.5__1292__AT3G49400.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.50e-12	45.4	323	358

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.........sdtllvsGsdDgtikvW 28
           H+++v+ +++         +   lv+Gs Dg++k+W
   Q: 323  HSSWVSTMSWgifgcdslnPQVVLVTGSCDGSVKIW 358
           *************98876433669************ PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MASRFQEASL VTSPSYPNAV AWSSENLIAV AAGHLVIIIN PALPSGPRGL ITISDAEPYQ 60
IGRVRSQDLL TGGLLPSSLK RERNPCVRSL SWSEIGMSPN HGCLLAVCTA EGRVKLYRPP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACTAGGGTTT CCGTACTGAA TCAAATTCAT CAGTTCGTTT GTCAAAGCTT AAGCCAAAGC 60
AAAGCAGAGC AAGTTTTTTT TTTTCCCTCC AAAAAAATTC AGTTGATCTT CAAACGGATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR024761--TFIIIC_delta_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12657--TFIIIC_delta
PF00400--WD40

SMART

SM00320--WD40

KEGG

aly:ARALYDRAFT_485300

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003046	Amborella trichopoda	40.57	2.00e-93	336.00
IUUC-Ath-007637	Arabidopsis thaliana	93.84	0.00e+00	1589.00
IUUC-Bdi-014902	Brachypodium distachyon	37.90	6.00e-148	517.00
IUUC-Bol-016169	Brassica oleracea	81.65	0.00e+00	1086.00
IUUC-Bra-017736	Brassica rapa	81.47	0.00e+00	1357.00
IUUC-Gma-044065	Glycine max	43.51	0.00e+00	667.00
IUUC-Mtr-057870	Medicago truncatula	42.16	0.00e+00	654.00
IUUC-Mac-065235	Musa acuminata	47.29	3.00e-96	346.00
IUUC-Ogl-077286	Oryza glaberrima	34.99	2.00e-142	499.00
IUUC-Oin-079863	Oryza indica	35.05	7.00e-148	517.00
IUUC-Oru-084242	Oryza rufipogon	33.54	3.00e-135	475.00
IUUC-Osa-085660	Oryza sativa	35.22	8.00e-149	520.00
IUUC-Ppa-095823	Physcomitrella patens	33.96	2.00e-81	296.00
IUUC-Pop-098900	Populus trichocarpa	47.69	0.00e+00	800.00
IUUC-Ppe-101763	Prunus persica	49.67	0.00e+00	775.00
IUUC-Smo-108757	Selaginella moellendorffii	29.67	5.00e-98	352.00
IUUC-Sit-110507	Setaria italica	38.80	3.00e-161	561.00
IUUC-Sly-111401	Solanum lycopersicum	44.02	4.00e-132	464.00
IUUC-Stu-112879	Solanum tuberosum	42.86	5.00e-104	370.00
IUUC-Tca-121440	Theobroma cacao	48.61	0.00e+00	818.00
IUUC-Tae-125429	Triticum aestivum	38.47	7.00e-104	371.00
IUUC-Vvi-131537	Vitis vinifera	50.57	6.00e-159	553.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence