iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bol-015355

Ensembl Protein ID

Bo1g097990.1

UniProt Accession

A0A0D3AAN4; A0A0D3AAN4_BRAOL

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bo1g097990	Bo1g097990.1	Bo1g097990.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.00e-34	116.6	140	178
UBD/Beta-Prp	3.70e-56	192.0	12	251

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +++ ++f +d + +v+G+ D+ +kvWDl+ g+l++
   Q: 140  GHTRDINTIKFsPDgRWVVTGGLDNAVKVWDLTAGKLIH 178
           8***********99999******************9876 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
            +h++ ++c+ + ++ ++ll+tg++d ++ +w + +++ l sl gh+++v ++ f++ + + + g++ ++ik+wdl+  k+v++++gh +s  +++f
   Q: 12   LAHSANVNCLSIgKKTSRLLITGGDDYKVNLWAIGKPTSLMSLCGHTSAVDSLAFDSAEVLVLGGASSGLIKLWDLEEAKMVRAFTGHRSSCSAVEF 108
           57899999999999********************************************9888999999***************************** PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgs 199
           +p g++l+sGs+d  +++wd++++ c++ t +gh++ +n+++++pdg+ +v+G+lD++v++Wdl  gkl+++++  h++s++sl+f++  + l++gs
   Q: 109  HPFGEFLASGSNDTNLKIWDIRKKGCIQ-TYKGHTRDINTIKFSPDGRWVVTGGLDNAVKVWDLTAGKLIHDFKF-HEGSIRSLDFHPLEFLLATGS 203
           ****************************.*********************************************9.********************* PP
   S: 200  ldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiri 248
            d+tvk+wdl+t e + + +  ++ v+s++f+p++  l +g +Dg +++
   Q: 204  ADRTVKFWDLETFELIGSTRPEDTGVRSIKFHPDGRTLFCGLDDG-LKV 251
           ***********************************9999997665.444 PP

Organism

Brassica oleracea

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MAKRGYKLQE FLAHSANVNC LSIGKKTSRL LITGGDDYKV NLWAIGKPTS LMSLCGHTSA 60
VDSLAFDSAE VLVLGGASSG LIKLWDLEEA KMVRAFTGHR SSCSAVEFHP FGEFLASGSN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGAAGC GTGGATATAA GCTGCGTATC CTTAATAGTT CTCTTGATGG CGATTTTGTT 60
GATGTTTTTT TTTTATTTTA AGAATAAAAC AATTGATTTT AGCTCTTCTT TTTATCAGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000869	Aegilops tauschii	62.89	3.00e-123	436.00
IUUC-Ath-006624	Arabidopsis thaliana	74.96	0.00e+00	1649.00
IUUC-Acl-008307	Aspergillus clavatus	33.59	3.00e-28	119.00
IUUC-Bra-017265	Brassica rapa	96.97	0.00e+00	2157.00
IUUC-Cin-025156	Ciona intestinalis	44.59	7.00e-84	304.00
IUUC-Hvu-047729	Hordeum vulgare	70.50	3.00e-146	511.00
IUUC-Mtr-057706	Medicago truncatula	44.13	0.00e+00	804.00
IUUC-Mac-065245	Musa acuminata	74.92	8.00e-151	527.00
IUUC-Ogu-078062	Oryza glumaepatula	67.23	3.00e-146	512.00
IUUC-Oin-080042	Oryza indica	67.23	4.00e-146	511.00
IUUC-Osa-085801	Oryza sativa	68.68	4.00e-149	521.00
IUUC-Ppe-101697	Prunus persica	60.15	5.00e-180	624.00
IUUC-Sly-111901	Solanum lycopersicum	43.26	0.00e+00	754.00
IUUC-Sbi-114389	Sorghum bicolor	70.81	3.00e-145	509.00
IUUC-Tca-121590	Theobroma cacao	66.10	0.00e+00	706.00
IUUC-Tae-125438	Triticum aestivum	70.50	3.00e-147	515.00
IUUC-Tur-126181	Triticum urartu	69.78	1.00e-144	506.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence