iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_029950	EOY28356	EOY28356
TCM_029950	EOY28361	EOY28361
TCM_029950	EOY28358	EOY28358
TCM_029950	EOY28362	EOY28362
TCM_029950	EOY28359	EOY28359
TCM_029950	EOY28357	EOY28357
TCM_029950	EOY28355	EOY28355

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.70e-37	125.0	140	178
UBD/Beta-Prp	2.40e-54	185.5	13	254

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +++ ++f +d + +vsG+ D+++kvWDl+ g+ll+
   Q: 140  GHTRGISTIRFtPDgRWVVSGGFDNVVKVWDLTAGKLLH 178
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgd 107
           +h++ ++c+ + ++ ++ll+tg++d+++ vw + +++ l sl gh+++v ++ f++ + + + g++ ++ik+wdl+  k+v+ l+gh ++ ++++f+p g+
   Q: 13   AHTANVNCLSMgKKTRRLLITGGDDHKVNVWAIGKPTSLMSLCGHTSPVESLAFDSAEVLVLAGASTGVIKLWDLEETKMVRGLTGHRSNCTAMEFHPFGE 113
           7888999999999*********************************************9999*************************************** PP
   S: 108  klvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwd 208
           +++sGs d  +++wd++++ c++ t +gh++ ++++++ pdg+ +vsG+ D++v++Wdl  gkll++++  h++ ++s++f++  + l++gs d+tvk+wd
   Q: 114  FFASGSMDTNLKIWDIRKKGCIH-TYKGHTRGISTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF-HEGHIHSIEFHPLEFLLATGSADRTVKFWD 212
           ***********************.*********************************************9.****************************** PP
   S: 209  lqtgecvrtlnghtdnvksvrfspnderlvsgs.sDgsiriW 249
           l+t e + + +   + v+s+ f+p++  l +g  +D  ++ W
   Q: 213  LETFELIGSSRPEATGVRSITFHPDGRTLFCGLdDDLKVYSW 254
           **************************9999997344445555 PP

Organism

Theobroma cacao

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MAKRGYKLQE FVAHTANVNC LSMGKKTRRL LITGGDDHKV NVWAIGKPTS LMSLCGHTSP 60
VESLAFDSAE VLVLAGASTG VIKLWDLEET KMVRGLTGHR SNCTAMEFHP FGEFFASGSM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCTTCATTAT TTTCTTTCTT TATGAGAAAA ATATATAAAT AAAAAAAGTA AATTACTTAA 60
AGTAGTTAAT GAACCAAATG ACAAGCTAAC CACTTAAAGT CAACAAATTT ATAAGTTTAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005897	Arabidopsis lyrata	50.29	0.00e+00	911.00
IUUC-Ath-006624	Arabidopsis thaliana	66.54	0.00e+00	701.00
IUUC-Bdi-014531	Brachypodium distachyon	45.58	6.00e-149	520.00
IUUC-Bol-015355	Brassica oleracea	66.10	0.00e+00	705.00
IUUC-Bra-017265	Brassica rapa	65.79	0.00e+00	703.00
IUUC-Gma-043323	Glycine max	61.43	0.00e+00	822.00
IUUC-Mtr-057706	Medicago truncatula	62.94	0.00e+00	753.00
IUUC-Ogl-077401	Oryza glaberrima	73.75	2.00e-147	516.00
IUUC-Pop-100006	Populus trichocarpa	60.02	0.00e+00	1141.00
IUUC-Ppe-101697	Prunus persica	64.45	0.00e+00	818.00
IUUC-Sly-111901	Solanum lycopersicum	62.50	0.00e+00	709.00
IUUC-Vvi-130939	Vitis vinifera	74.33	0.00e+00	822.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence