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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Spo-108372
UUCD1 version UUC-ScP-00101
Ensembl Protein ID SPBC19F5.02c.1:pep
UniProt Accession O60161; UTP4_SCHPO
Genbank Protein ID CAA18650.1
Protein Name U3 small nucleolar RNA-associated protein 4; U3 protein 4 required for transcription
Genbank Nucleotide ID CU329671
Gene Name utp4; SPBC19F5.02c
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
SPBC19F5.02c SPBC19F5.02c.1 SPBC19F5.02c.1:pep
Annotation
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 6.50e-14 49.7 156 187
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 3    tdsvtclafsd.tllvsGsdDgtikvWDlrtg 33
           t+++ +l+f++ ++lv G+ Dg+ikvWDl+t 
   Q: 156  TSRILSLDFQTkDHLVGGCADGVIKVWDLSTP 187
           789******5559***************9886 PP
   
Organism Schizosaccharomyces pombe
Functional Description
(View)

Functional Description


     Involved in nucleolar processing of pre-18S ribosomal RNA. Required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs) (By similarity).
 Involved in nucleolar processing of pre-18S ribosomal RNA. Required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs) (By similarity).
Protein Sequence
(Fasta)
MDIHRCRFID YTPSAITAMA FSHKSGQNDS MPNNLLLAVG RASGNIEIWN PRNDWCLKTV 60
LYGGVDRSIE GIVWSTGEEE LRLFSIGFST TITEWNLHTG KPLVNQDSNA GAIWSIAICD 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Spo-108372|E3,WD_repeat|Schizosaccharomyces pombe
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CAAATTTCTT CCACTACCAT TTACCAACGG AGTTCCAAAG GACACTCTGA AGAGTGCTTT 60
AGAAGAATAA TACATATTTG TAATATTAAT AGTAGATACT TTGATTATTC TTCACGTTGA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Spo-108372|E3,WD_repeat|Schizosaccharomyces pombe
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0687--Ribonucleoprotein
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0804--Transcription
KW-0853--WD repeat
Interpro

IPR011044--Quino_amine_DH_bsu
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
SMART

SM00320--WD40
Gene Ontology

GO:0072686--C:mitotic spindle
GO:0005634--C:nucleus
GO:0032040--C:small-subunit processome
GO:0034455--C:t-UTP complex
GO:0030515--F:snoRNA binding
GO:0030490--P:maturation of SSU-rRNA
GO:0006351--P:transcription, DNA-templated
KEGG spo:SPBC19F5.02c
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001161 Aegilops tauschii 25.65 8.00e-46 176.00
IUUC-Aml-001310 Ailuropoda melanoleuca 29.78 1.00e-72 265.00
IUUC-Atr-003076 Amborella trichopoda 23.32 1.00e-37 149.00
IUUC-Apl-003367 Anas platyrhynchos 32.73 3.00e-14 69.30
IUUC-Aca-004429 Anolis carolinensis 30.26 4.00e-41 159.00
IUUC-Aly-006271 Arabidopsis lyrata 22.54 6.00e-37 147.00
IUUC-Ath-007331 Arabidopsis thaliana 22.87 2.00e-36 145.00
IUUC-Ago-007843 Ashbya gossypii 35.34 9.00e-124 435.00
IUUC-Acl-008229 Aspergillus clavatus 31.73 7.00e-103 366.00
IUUC-Afl-008438 Aspergillus flavus 32.67 6.00e-106 376.00
IUUC-Afu-008910 Aspergillus fumigatus 31.87 7.00e-104 369.00
IUUC-Ani-009321 Aspergillus nidulans 32.71 8.00e-97 346.00
IUUC-Ang-009592 Aspergillus niger 31.71 2.00e-103 368.00
IUUC-Aor-010220 Aspergillus oryzae 31.68 3.00e-108 384.00
IUUC-Ate-010317 Aspergillus terreus 31.68 3.00e-99 354.00
IUUC-Ame-010957 Astyanax mexicanus 27.97 1.00e-60 225.00
IUUC-Bgr-012057 Blumeria graminis 31.14 2.00e-102 364.00
IUUC-Bta-012473 Bos taurus 29.78 8.00e-72 263.00
IUUC-Bdi-014203 Brachypodium distachyon 23.61 1.00e-44 172.00
IUUC-Bol-015940 Brassica oleracea 24.64 3.00e-43 169.00
IUUC-Bra-017482 Brassica rapa 24.17 2.00e-44 172.00
IUUC-Cja-019942 Callithrix jacchus 28.88 2.00e-72 265.00
IUUC-Cfa-020549 Canis familiaris 31.75 2.00e-56 211.00
IUUC-Cpo-022088 Cavia porcellus 28.09 1.00e-68 252.00
IUUC-Csa-023773 Chlorocebus sabaeus 28.92 6.00e-73 266.00
IUUC-Cho-024302 Choloepus hoffmanni 28.73 3.00e-54 204.00
IUUC-Cin-025384 Ciona intestinalis 27.05 5.00e-66 243.00
IUUC-Dre-027460 Danio rerio 27.19 4.00e-64 237.00
IUUC-Dno-029594 Dasypus novemcinctus 29.10 1.00e-67 248.00
IUUC-Dor-030564 Dipodomys ordii 25.75 3.00e-31 128.00
IUUC-Dse-031179 Dothistroma septosporum 30.64 1.00e-73 269.00
IUUC-Dme-031603 Drosophila melanogaster 23.85 5.00e-33 134.00
IUUC-Ete-032655 Echinops telfairi 26.98 3.00e-56 211.00
IUUC-Eca-033838 Equus caballus 29.84 3.00e-72 264.00
IUUC-Eeu-034548 Erinaceus europaeus 27.43 1.00e-63 235.00
IUUC-Fca-035715 Felis catus 29.78 2.00e-71 261.00
IUUC-Fal-037394 Ficedula albicollis 26.32 1.00e-49 189.00
IUUC-Gmo-039235 Gadus morhua 24.46 9.00e-49 186.00
IUUC-Ggr-040043 Gaeumannomyces graminis 27.17 1.00e-72 266.00
IUUC-Gga-041172 Gallus gallus 25.61 9.00e-62 229.00
IUUC-Gac-042466 Gasterosteus aculeatus 27.14 4.00e-60 224.00
IUUC-Gma-044222 Glycine max 24.19 2.00e-44 172.00
IUUC-Ggo-045416 Gorilla gorilla 27.63 7.00e-63 233.00
IUUC-Hsa-046115 Homo sapiens 29.10 8.00e-67 246.00
IUUC-Hvu-047229 Hordeum vulgare 26.15 7.00e-47 180.00
IUUC-Itr-048015 Ictidomys tridecemlineatus 28.61 3.00e-72 264.00
IUUC-Kpa-049370 Komagataella pastoris 33.01 3.00e-103 367.00
IUUC-Lch-050153 Latimeria chalumnae 28.01 4.00e-66 243.00
IUUC-Lpe-051220 Leersia perrieri 23.12 4.00e-45 174.00
IUUC-Loc-052617 Lepisosteus oculatus 27.78 3.00e-68 251.00
IUUC-Laf-053613 Loxodonta africana 28.74 6.00e-73 266.00
IUUC-Mcc-055707 Macaca mulatta 29.10 1.00e-67 248.00
IUUC-Meu-056800 Macropus eugenii 25.15 3.00e-22 98.20
IUUC-Mor-057245 Magnaporthe oryzae 30.16 3.00e-79 287.00
IUUC-Mpo-057446 Magnaporthe poae 32.60 2.00e-72 265.00
IUUC-Mtr-058748 Medicago truncatula 24.96 3.00e-44 171.00
IUUC-Mga-060018 Meleagris gallopavo 25.42 6.00e-58 216.00
IUUC-Mmr-061115 Microcebus murinus 28.61 1.00e-69 255.00
IUUC-Mdo-062235 Monodelphis domestica 28.11 2.00e-68 251.00
IUUC-Mmu-063158 Mus musculus 28.21 1.00e-70 258.00
IUUC-Mac-065380 Musa acuminata 23.40 9.00e-44 169.00
IUUC-Mpu-065805 Mustela putorius furo 29.65 5.00e-72 263.00
IUUC-Mlu-066951 Myotis lucifugus 29.19 2.00e-69 254.00
IUUC-Nfi-068295 Neosartorya fischeri 31.47 2.00e-102 365.00
IUUC-Ncr-068880 Neurospora crassa 32.29 3.00e-80 291.00
IUUC-Nle-069657 Nomascus leucogenys 28.98 2.00e-72 265.00
IUUC-Opr-070250 Ochotona princeps 28.61 2.00e-69 254.00
IUUC-Ont-072642 Oreochromis niloticus 27.85 1.00e-58 219.00
IUUC-Ocu-074741 Oryctolagus cuniculus 29.38 1.00e-72 265.00
IUUC-Oba-074974 Oryza barthii 23.25 8.00e-46 176.00
IUUC-Obr-076586 Oryza brachyantha 24.92 5.00e-42 164.00
IUUC-Ogl-077782 Oryza glaberrima 23.34 3.00e-47 181.00
IUUC-Ogu-078333 Oryza glumaepatula 22.91 4.00e-43 167.00
IUUC-Oin-079852 Oryza indica 23.67 6.00e-48 183.00
IUUC-Olo-080370 Oryza longistaminata 26.39 8.00e-42 163.00
IUUC-Ome-081442 Oryza meridionalis 23.63 1.00e-46 179.00
IUUC-Oni-082341 Oryza nivara 22.75 6.00e-43 167.00
IUUC-Opu-083824 Oryza punctata 23.45 6.00e-46 177.00
IUUC-Oru-084827 Oryza rufipogon 23.53 6.00e-47 180.00
IUUC-Osa-085742 Oryza sativa 23.63 1.00e-48 186.00
IUUC-Ola-086466 Oryzias latipes 27.27 4.00e-57 214.00
IUUC-Olu-087761 Ostreococcus lucimarinus 24.64 2.00e-54 205.00
IUUC-Oga-088721 Otolemur garnettii 29.07 7.00e-58 216.00
IUUC-Oar-089532 Ovis aries 29.78 6.00e-72 263.00
IUUC-Ptr-091604 Pan troglodytes 29.11 5.00e-72 263.00
IUUC-Pan-092060 Papio anubis 32.63 1.00e-46 178.00
IUUC-Psi-093070 Pelodiscus sinensis 25.75 2.00e-56 211.00
IUUC-Pma-094201 Petromyzon marinus 26.16 3.00e-42 164.00
IUUC-Pno-094924 Phaeosphaeria nodorum 27.75 3.00e-29 121.00
IUUC-Ppa-095599 Physcomitrella patens 28.23 8.00e-36 143.00
IUUC-Pfo-097207 Poecilia formosa 28.88 6.00e-56 210.00
IUUC-Pab-097746 Pongo abelii 28.98 7.00e-72 263.00
IUUC-Pop-099669 Populus trichocarpa 22.71 3.00e-42 164.00
IUUC-Pca-100562 Procavia capensis 28.01 5.00e-45 173.00
IUUC-Ppe-101747 Prunus persica 21.89 3.00e-41 161.00
IUUC-Pva-103054 Pteropus vampyrus 29.78 2.00e-73 268.00
IUUC-Pte-104064 Pyrenophora teres 31.72 9.00e-77 279.00
IUUC-Pyt-104595 Pyrenophora triticirepentis 32.76 4.00e-79 287.00
IUUC-Rno-105155 Rattus norvegicus 28.57 7.00e-70 256.00
IUUC-Sce-106369 Saccharomyces cerevisiae 35.69 4.00e-135 473.00
IUUC-Sha-107149 Sarcophilus harrisii 28.28 3.00e-70 257.00
IUUC-Sja-107777 Schizosaccharomyces japonicus 61.88 0.00e+00 927.00
IUUC-Ssl-108650 Sclerotinia sclerotiorum 30.98 5.00e-102 363.00
IUUC-Smo-108851 Selaginella moellendorffii 24.45 4.00e-48 184.00
IUUC-Sit-110454 Setaria italica 24.35 8.00e-48 183.00
IUUC-Sly-111875 Solanum lycopersicum 24.09 1.00e-47 182.00
IUUC-Stu-112275 Solanum tuberosum 24.62 1.00e-45 176.00
IUUC-Sar-113254 Sorex araneus 35.14 2.00e-24 105.00
IUUC-Sbi-114624 Sorghum bicolor 25.41 6.00e-42 163.00
IUUC-Sre-114985 Sporisorium reilianum 33.15 5.00e-22 98.20
IUUC-Tgu-117407 Taeniopygia guttata 28.95 4.00e-37 146.00
IUUC-Tru-118733 Takifugu rubripes 25.10 2.00e-51 195.00
IUUC-Tsy-119213 Tarsius syrichta 31.61 1.00e-38 152.00
IUUC-Tni-120894 Tetraodon nigroviridis 29.53 1.00e-35 141.00
IUUC-Tca-121606 Theobroma cacao 23.61 4.00e-42 164.00
IUUC-Tre-121958 Trichoderma reesei 34.97 2.00e-89 322.00
IUUC-Tvi-122290 Trichoderma virens 30.02 2.00e-96 345.00
IUUC-Tae-125538 Triticum aestivum 23.87 2.00e-47 182.00
IUUC-Tme-126995 Tuber melanosporum 34.07 8.00e-109 386.00
IUUC-Tbe-127605 Tupaia belangeri 26.56 4.00e-08 51.20
IUUC-Ttr-128720 Tursiops truncatus 29.42 1.00e-69 255.00
IUUC-Uma-129564 Ustilago maydis 37.41 4.00e-20 91.70
IUUC-Vpa-130412 Vicugna pacos 35.02 3.00e-35 141.00
IUUC-Vvi-131256 Vitis vinifera 22.12 2.00e-41 162.00
IUUC-Xtr-131828 Xenopus tropicalis 25.84 1.00e-52 199.00
IUUC-Xma-133394 Xiphophorus maculatus 29.26 6.00e-58 216.00
IUUC-Yli-134565 Yarrowia lipolytica 45.84 9.00e-100 355.00
Created Date 25-Jun-2017

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