iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007134

UUCD1 version

UUC-ArT-00280

Ensembl Protein ID

AT1G24330.1

UniProt Accession

O48700; PUB6_ARATH

Genbank Protein ID

AAC00595.1; AEE30517.1; ANM61155.1

Protein Name

U-box domain-containing protein 6; Plant U-box protein 6; RING-type E3 ubiquitin transferase PUB6

Genbank Nucleotide ID

AC002396; CP002684; CP002684

Gene Name

PUB6; At1g24330; F3I6.27

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G24330	AT1G24330.1	AT1G24330.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.10e-30	106.4	275	347

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +pee++CpIsl+lM dPv+++sG+ty+r +Iekw+++g+++cP+t+q+l + +l+Pn+ ++ li +wce+n++
   Q: 275  PPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQLPHLSLTPNYCVKGLIASWCEQNGI 347
           59********************************************************************986 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MDVSELEENL FAASDAKLHG DMCKELSAVY CKVLSIFPSL EEARPRSKSG IQTLCSLHIA 60
LEKAKNILQH CSECSKLYLA ITGDAVLLKF EKAKSALIDS LRRVEDIVPS SIGSQILDIV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCGTGTTTCA ATTACTAATC GTAGATTTTT GCGAGTTTTG TGGAGCTGAC ACAGTTCTTC 60
TCTTTCTCAT CATCATCCCC ATTTTATTCG TCTCTCTTCC TTCCGTTATG CTCCATTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0009507--C:chloroplast
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

ath:AT1G24330

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002816	Amborella trichopoda	55.60	0.00e+00	736.00
IUUC-Aly-006405	Arabidopsis lyrata	92.92	0.00e+00	1468.00
IUUC-Bol-015505	Brassica oleracea	84.54	0.00e+00	1313.00
IUUC-Bra-017413	Brassica rapa	86.18	0.00e+00	1340.00
IUUC-Gma-043476	Glycine max	66.07	0.00e+00	989.00
IUUC-Mtr-058026	Medicago truncatula	66.24	0.00e+00	938.00
IUUC-Mac-064644	Musa acuminata	53.69	0.00e+00	707.00
IUUC-Oba-075037	Oryza barthii	54.03	0.00e+00	807.00
IUUC-Ogl-077029	Oryza glaberrima	54.03	0.00e+00	807.00
IUUC-Ogu-078230	Oryza glumaepatula	54.47	0.00e+00	806.00
IUUC-Olo-080879	Oryza longistaminata	56.28	0.00e+00	774.00
IUUC-Oni-082610	Oryza nivara	54.25	0.00e+00	804.00
IUUC-Osa-085376	Oryza sativa	53.40	0.00e+00	797.00
IUUC-Pop-100088	Populus trichocarpa	68.35	0.00e+00	1080.00
IUUC-Ppe-101913	Prunus persica	67.73	0.00e+00	1052.00
IUUC-Tca-121734	Theobroma cacao	70.60	0.00e+00	1065.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence