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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Rno-105084
Ensembl Protein ID ENSRNOP00000033485.4
UniProt Accession G3V920; G3V920_RAT
Genbank Protein ID EDM02876.1
Protein Name RCG61879; WD repeat domain 43
Genbank Nucleotide ID AABR07073209
Gene Name Wdr43; rCG_61879
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000026316.4 ENSRNOT00000035320.4 ENSRNOP00000033485.4
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
miRNAMapRAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlus
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 4.10e-17 62.0 124 151
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtik 26
           gH+ +v+c+++ +d + l s+sdD+ i 
   Q: 124  GHEKRVNCIQWhQDnDCLYSCSDDKYIV 151
           8***********66699*******9986 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MAAGGGGSCD PLAPAGVPCA FSPDSQAYFA LASSDGHLRV WETANNRLHQ EYVPSAHLSG 60
TCTCLAWAPA RLQAKESHQR KKRKSEAIGT NDQADLLALG TAVGSILLYS TVKGELHSKL 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105084|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGGGCGAACA CGTGGCTGCC GCGGAGCTAG AGCAGCAATG GCGGCCGGTG GCGGCGGTAG 60
CTGCGACCCC TTGGCCCCGG CGGGGGTCCC CTGCGCCTTC TCGCCGGACA GTCAAGCCTA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105084|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat
Interpro

IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04003--Utp12
PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0001650--C:fibrillar center
GO:0003723--F:RNA binding
KEGG rno:362703
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001865 Ailuropoda melanoleuca 88.47 0.00e+00 1051.00
IUUC-Atr-002533 Amborella trichopoda 20.16 5.00e-23 102.00
IUUC-Apl-003242 Anas platyrhynchos 70.75 0.00e+00 756.00
IUUC-Aca-004607 Anolis carolinensis 68.74 0.00e+00 824.00
IUUC-Aly-006074 Arabidopsis lyrata 25.53 4.00e-16 79.70
IUUC-Ath-007222 Arabidopsis thaliana 25.53 1.00e-15 78.20
IUUC-Ame-011014 Astyanax mexicanus 52.63 4.00e-170 591.00
IUUC-Bta-012605 Bos taurus 87.98 0.00e+00 1063.00
IUUC-Bdi-014072 Brachypodium distachyon 20.55 4.00e-21 96.30
IUUC-Bol-016255 Brassica oleracea 27.03 6.00e-22 99.40
IUUC-Bra-016850 Brassica rapa 27.70 2.00e-23 103.00
IUUC-Cja-019620 Callithrix jacchus 88.65 0.00e+00 1070.00
IUUC-Cfa-020520 Canis familiaris 87.98 0.00e+00 1062.00
IUUC-Cpo-022456 Cavia porcellus 83.16 0.00e+00 1058.00
IUUC-Cho-024726 Choloepus hoffmanni 86.44 0.00e+00 999.00
IUUC-Cin-025761 Ciona intestinalis 36.29 2.00e-95 343.00
IUUC-Dre-028051 Danio rerio 52.37 7.00e-175 607.00
IUUC-Dno-030031 Dasypus novemcinctus 87.15 0.00e+00 1044.00
IUUC-Dme-031653 Drosophila melanogaster 26.69 2.00e-41 164.00
IUUC-Ete-032863 Echinops telfairi 71.43 3.00e-90 326.00
IUUC-Eca-033243 Equus caballus 87.94 0.00e+00 902.00
IUUC-Eeu-034970 Erinaceus europaeus 83.30 0.00e+00 757.00
IUUC-Fca-036009 Felis catus 87.97 0.00e+00 1045.00
IUUC-Fal-037264 Ficedula albicollis 69.22 0.00e+00 739.00
IUUC-Gmo-039124 Gadus morhua 55.08 2.00e-174 605.00
IUUC-Gga-040862 Gallus gallus 69.11 0.00e+00 812.00
IUUC-Gac-041468 Gasterosteus aculeatus 55.25 0.00e+00 637.00
IUUC-Gma-042795 Glycine max 22.13 3.00e-12 67.00
IUUC-Ggo-044432 Gorilla gorilla 89.15 0.00e+00 1079.00
IUUC-Hsa-047036 Homo sapiens 85.38 0.00e+00 1084.00
IUUC-Itr-048644 Ictidomys tridecemlineatus 90.32 0.00e+00 1095.00
IUUC-Lch-049553 Latimeria chalumnae 60.99 0.00e+00 728.00
IUUC-Laf-053462 Loxodonta africana 87.31 0.00e+00 1083.00
IUUC-Mcc-055239 Macaca mulatta 89.65 0.00e+00 1079.00
IUUC-Mtr-057977 Medicago truncatula 20.74 8.00e-18 85.50
IUUC-Mga-060079 Meleagris gallopavo 70.94 0.00e+00 746.00
IUUC-Mmr-061472 Microcebus murinus 87.48 0.00e+00 1059.00
IUUC-Mdo-061972 Monodelphis domestica 78.07 0.00e+00 957.00
IUUC-Mmu-063354 Mus musculus 93.14 0.00e+00 1127.00
IUUC-Mac-065064 Musa acuminata 24.25 5.00e-17 82.00
IUUC-Mpu-066877 Mustela putorius furo 87.48 0.00e+00 1058.00
IUUC-Mlu-067476 Myotis lucifugus 84.64 0.00e+00 1011.00
IUUC-Nle-069119 Nomascus leucogenys 89.15 0.00e+00 1074.00
IUUC-Ont-072093 Oreochromis niloticus 54.31 0.00e+00 668.00
IUUC-Oan-072944 Ornithorhynchus anatinus 68.93 0.00e+00 812.00
IUUC-Ocu-074472 Oryctolagus cuniculus 87.81 0.00e+00 1030.00
IUUC-Oba-075009 Oryza barthii 20.88 8.00e-16 79.00
IUUC-Ogl-077189 Oryza glaberrima 19.80 2.00e-15 77.40
IUUC-Oin-079064 Oryza indica 20.85 2.00e-15 77.40
IUUC-Opu-083604 Oryza punctata 21.52 5.00e-14 72.80
IUUC-Oru-084620 Oryza rufipogon 20.85 2.00e-15 77.40
IUUC-Osa-085345 Oryza sativa 20.85 6.00e-16 79.30
IUUC-Ola-086626 Oryzias latipes 54.18 0.00e+00 661.00
IUUC-Oga-087911 Otolemur garnettii 88.01 0.00e+00 1050.00
IUUC-Ptr-091603 Pan troglodytes 85.23 0.00e+00 1083.00
IUUC-Pan-092569 Papio anubis 89.65 0.00e+00 1079.00
IUUC-Pma-094287 Petromyzon marinus 51.45 5.00e-177 614.00
IUUC-Ppa-095327 Physcomitrella patens 26.25 2.00e-36 147.00
IUUC-Pfo-097292 Poecilia formosa 55.01 3.00e-180 625.00
IUUC-Pab-097878 Pongo abelii 89.15 0.00e+00 1057.00
IUUC-Pop-099418 Populus trichocarpa 22.04 1.00e-19 91.70
IUUC-Pca-100941 Procavia capensis 81.44 0.00e+00 951.00
IUUC-Ppe-101779 Prunus persica 21.82 4.00e-20 93.20
IUUC-Pva-102493 Pteropus vampyrus 79.90 0.00e+00 958.00
IUUC-Sha-107486 Sarcophilus harrisii 77.33 0.00e+00 948.00
IUUC-Smo-108825 Selaginella moellendorffii 22.40 1.00e-18 87.80
IUUC-Sit-110825 Setaria italica 22.56 2.00e-20 94.00
IUUC-Sly-111365 Solanum lycopersicum 22.65 2.00e-19 90.50
IUUC-Stu-112812 Solanum tuberosum 22.49 9.00e-18 85.10
IUUC-Sar-113326 Sorex araneus 90.83 2.00e-133 469.00
IUUC-Sbi-114426 Sorghum bicolor 21.44 7.00e-23 102.00
IUUC-Tgu-116726 Taeniopygia guttata 67.46 0.00e+00 802.00
IUUC-Tru-117848 Takifugu rubripes 54.05 1.00e-179 623.00
IUUC-Tsy-119091 Tarsius syrichta 61.81 2.00e-128 452.00
IUUC-Tni-120591 Tetraodon nigroviridis 54.91 0.00e+00 629.00
IUUC-Tca-121576 Theobroma cacao 25.20 3.00e-16 80.50
IUUC-Tae-125648 Triticum aestivum 21.90 5.00e-20 92.80
IUUC-Tbe-127832 Tupaia belangeri 88.17 0.00e+00 917.00
IUUC-Ttr-128812 Tursiops truncatus 87.40 0.00e+00 910.00
IUUC-Xma-133557 Xiphophorus maculatus 55.18 0.00e+00 628.00
Created Date 25-Jun-2017

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