iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.40e-25	90.0	219	290

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           +pe f+C++s ++M dPv+++sG t++r  I+kw+++g+ +cP+ +++l++ +l+Pn +l++ i++wc++n+
   Q: 219  LPEKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDEGNDSCPISKRKLDDFTLKPNVELKSQISEWCAKNG 290
           79*******************************************************************997 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MRIDYTERMP QSYKMHSSMC LELKRLVDRI MRIFPDIEDA RPGCSSGIQT LCLLHNALDK 60
TKQLLQYCSE SSKLYMAVTG DAILARGSRA KKSLEQCLND IRSIVPTILE IKISQIVQDL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTCTTTTTCT CCAGGTTTTT ACCAACCAGT TTTTTTTTTT TCAACCCTCG AGATCTTTCT 60
TTGCACGAAC AAACCTCGAA AAACTCATTC TTTATCTTGA CCCATCTGAA AAAGTTTCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

ath:AT4G36550

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005788	Arabidopsis lyrata	83.95	0.00e+00	1151.00
IUUC-Bol-016241	Brassica oleracea	65.81	0.00e+00	869.00
IUUC-Bra-018043	Brassica rapa	66.44	0.00e+00	876.00
IUUC-Gma-044052	Glycine max	38.71	8.00e-127	447.00
IUUC-Mtr-058215	Medicago truncatula	38.73	3.00e-114	405.00
IUUC-Mac-065459	Musa acuminata	29.58	1.00e-53	203.00
IUUC-Ppe-101895	Prunus persica	38.80	1.00e-76	280.00
IUUC-Sly-111406	Solanum lycopersicum	33.56	7.00e-91	327.00
IUUC-Stu-112174	Solanum tuberosum	33.60	1.00e-97	350.00
IUUC-Tca-121394	Theobroma cacao	39.17	2.00e-128	452.00
IUUC-Vvi-130887	Vitis vinifera	37.62	1.00e-112	400.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence