iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINT
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	20810661
UBD/ZnF/ZnF_UBP	ZnF_UBP	20810661

Classification

Family	E-value	Score	Start	End
UBD/ZnF/ZnF_UBP	1.70e-26	93.1	224	284

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/ZnF/ZnF_UBP

   S: 2    kcsvcdktenlWlcLtcgsvgCGRyvegHalkHyeetqhplvlslstlsvycYacddyvhr 62
           +cs+c+kten+W cL+cg+vgCGRy+egH+++H++et+h+++l+l+t+++++Y++d+yvhr
   Q: 224  NCSICGKTENVWACLVCGFVGCGRYKEGHSIRHWKETHHCYSLDLRTQQIWDYVGDSYVHR 284
           6**********************************************************96 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MFILRVHSVD SERPISVEEE ESGFTYASKR AQPPLKLIQP SLKLTDRKGL IHLYRKSSHS 60
SLPNPSSRST TLFIVAVPNY LSSLDFIRFC DSRISQVSDI LFIRNDGMED RYSVLITFSD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GACGAATCAA AAAATCAGAA AGAAGAAGCA TCGTCGTCTC TTTTCTTCTC TCCGAGTAGC 60
TTAAGCTTTC GTCGTCGAGC TCTTTCCCGC TTCTGGCGAT GTTCATCCTC AGAGTTCATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0378--Hydrolase
KW-1185--Reference proteome

Interpro

IPR011422--BRAP2
IPR033273--BRIZ1
IPR012677--Nucleotide-bd_a/b_plait
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR001607--Znf_UBP

PROSITE

PS50089--ZF_RING_2
PS50271--ZF_UBP

Pfam

PF07576--BRAP2
PF02148--zf-UBP

SMART

SM00290--ZnF_UBP

Gene Ontology

GO:0000151--C:ubiquitin ligase complex
GO:0046982--F:protein heterodimerization activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0010029--P:regulation of seed germination

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000519	Aegilops tauschii	48.78	3.00e-107	381.00
IUUC-Aly-006553	Arabidopsis lyrata	94.26	0.00e+00	873.00
IUUC-Bdi-015007	Brachypodium distachyon	52.32	8.00e-118	416.00
IUUC-Bol-015728	Brassica oleracea	85.28	0.00e+00	811.00
IUUC-Bra-018057	Brassica rapa	84.93	0.00e+00	777.00
IUUC-Gma-043570	Glycine max	60.64	1.00e-161	561.00
IUUC-Hvu-047475	Hordeum vulgare	50.74	2.00e-76	278.00
IUUC-Lpe-050777	Leersia perrieri	52.32	9.00e-133	466.00
IUUC-Loc-052160	Lepisosteus oculatus	28.10	2.00e-44	172.00
IUUC-Mtr-058559	Medicago truncatula	63.06	7.00e-167	579.00
IUUC-Mac-065159	Musa acuminata	47.90	2.00e-138	484.00
IUUC-Oba-075084	Oryza barthii	52.08	1.00e-132	466.00
IUUC-Obr-076449	Oryza brachyantha	52.38	1.00e-128	452.00
IUUC-Ogl-077482	Oryza glaberrima	52.08	4.00e-132	464.00
IUUC-Ogu-078968	Oryza glumaepatula	52.08	9.00e-133	466.00
IUUC-Oin-079888	Oryza indica	46.70	2.00e-113	401.00
IUUC-Olo-080753	Oryza longistaminata	52.43	4.00e-120	423.00
IUUC-Ome-081756	Oryza meridionalis	52.08	1.00e-132	465.00
IUUC-Oni-082434	Oryza nivara	52.08	1.00e-132	466.00
IUUC-Opu-083262	Oryza punctata	52.08	2.00e-132	465.00
IUUC-Oru-084381	Oryza rufipogon	52.08	9.00e-133	466.00
IUUC-Osa-085498	Oryza sativa	52.08	2.00e-132	465.00
IUUC-Pop-099070	Populus trichocarpa	60.69	1.00e-180	625.00
IUUC-Ppe-101827	Prunus persica	61.99	0.00e+00	636.00
IUUC-Sja-107665	Schizosaccharomyces japonicus	33.26	5.00e-69	254.00
IUUC-Sit-110709	Setaria italica	52.97	8.00e-121	426.00
IUUC-Sly-110984	Solanum lycopersicum	53.39	2.00e-133	468.00
IUUC-Stu-112489	Solanum tuberosum	53.18	6.00e-133	466.00
IUUC-Sar-113080	Sorex araneus	32.43	2.00e-38	152.00
IUUC-Tca-121400	Theobroma cacao	61.89	0.00e+00	649.00
IUUC-Tae-124840	Triticum aestivum	52.57	6.00e-120	424.00
IUUC-Vvi-131579	Vitis vinifera	57.46	6.00e-166	576.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence