iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Dre-028141

Ensembl Protein ID

ENSDARP00000038520.4

UniProt Accession

Q7T372; Q7T372_DANRE

Genbank Protein ID

AAH53229.1; AAI64463.1

Protein Name

Actin related protein 2/3 complex, subunit 1B; Actin-related protein 2/3 complex, subunit 1B; Arpc1b protein

Genbank Nucleotide ID

BX649536; BC164463

Gene Name

arpc1b

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000027063.4	ENSDART00000033713.4	ENSDARP00000038520.4

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-20	73.1	51	81

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           H++ vt++++ ++ +++v+++ D + +vW l
   Q: 51   HNGQVTGIDWaPEsNRIVTCGTDRNAYVWTL 81
           9**********888***************75 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MAYHSFLLEP ISCHAWNKDR TQIALCPNNH EVHIYNKAGN NWNKIHVLKE HNGQVTGIDW 60
APESNRIVTC GTDRNAYVWT LKGDAWKPTL VILRINRAAR CVKWSPKENK FAVGSGSRLI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACGACTAAG GAAATAGTTG AGTTCATTCA GAGCAAAGCC AGCGTTTGTG TTGACTGCTC 60
AGAGTCCACG AACCCAGGCT TCTGTCGCAG GCTTTGTCAG CCCCCCCGCC TCTAGCATCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR030141--ARC1B
IPR017383--ARPC1
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005885--C:Arp2/3 protein complex
GO:0051015--F:actin filament binding
GO:0034314--P:Arp2/3 complex-mediated actin nucleation

KEGG

dre:335474

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001709	Ailuropoda melanoleuca	79.20	0.00e+00	635.00
IUUC-Aly-005532	Arabidopsis lyrata	40.38	1.00e-80	293.00
IUUC-Ath-006683	Arabidopsis thaliana	41.19	2.00e-81	296.00
IUUC-Ame-011512	Astyanax mexicanus	92.68	0.00e+00	726.00
IUUC-Bta-012442	Bos taurus	79.30	0.00e+00	636.00
IUUC-Bol-016274	Brassica oleracea	42.16	2.00e-83	302.00
IUUC-Bra-016790	Brassica rapa	41.08	4.00e-81	295.00
IUUC-Cja-019899	Callithrix jacchus	80.11	0.00e+00	641.00
IUUC-Cfa-020067	Canis familiaris	79.51	0.00e+00	636.00
IUUC-Cpo-022461	Cavia porcellus	80.32	0.00e+00	640.00
IUUC-Csa-023277	Chlorocebus sabaeus	77.09	2.00e-176	612.00
IUUC-Dor-030559	Dipodomys ordii	80.86	0.00e+00	648.00
IUUC-Ete-032299	Echinops telfairi	80.05	0.00e+00	642.00
IUUC-Eca-033593	Equus caballus	78.49	0.00e+00	625.00
IUUC-Fca-036254	Felis catus	80.32	0.00e+00	641.00
IUUC-Fal-037453	Ficedula albicollis	81.08	0.00e+00	647.00
IUUC-Gmo-038471	Gadus morhua	76.34	4.00e-171	593.00
IUUC-Gga-040898	Gallus gallus	80.98	0.00e+00	650.00
IUUC-Gac-042236	Gasterosteus aculeatus	80.00	0.00e+00	637.00
IUUC-Gma-042803	Glycine max	41.07	7.00e-81	294.00
IUUC-Ggo-045355	Gorilla gorilla	65.32	1.00e-142	499.00
IUUC-Hsa-046623	Homo sapiens	80.05	0.00e+00	639.00
IUUC-Itr-048596	Ictidomys tridecemlineatus	80.59	0.00e+00	644.00
IUUC-Lch-049679	Latimeria chalumnae	79.89	0.00e+00	640.00
IUUC-Loc-052140	Lepisosteus oculatus	85.64	0.00e+00	652.00
IUUC-Laf-054287	Loxodonta africana	78.13	2.00e-176	612.00
IUUC-Meu-056302	Macropus eugenii	80.98	0.00e+00	652.00
IUUC-Mtr-057659	Medicago truncatula	39.79	2.00e-82	299.00
IUUC-Mga-059279	Meleagris gallopavo	80.98	0.00e+00	650.00
IUUC-Mmr-060752	Microcebus murinus	80.56	0.00e+00	630.00
IUUC-Mdo-062836	Monodelphis domestica	77.17	8.00e-176	609.00
IUUC-Mmu-064099	Mus musculus	80.00	0.00e+00	639.00
IUUC-Mac-064632	Musa acuminata	40.16	2.00e-79	289.00
IUUC-Mpu-066247	Mustela putorius furo	79.25	0.00e+00	626.00
IUUC-Mlu-067571	Myotis lucifugus	81.08	0.00e+00	647.00
IUUC-Ont-071316	Oreochromis niloticus	81.05	0.00e+00	627.00
IUUC-Oan-072692	Ornithorhynchus anatinus	80.43	0.00e+00	645.00
IUUC-Ocu-074187	Oryctolagus cuniculus	77.60	4.00e-178	617.00
IUUC-Oba-075379	Oryza barthii	40.66	2.00e-77	283.00
IUUC-Ogl-077409	Oryza glaberrima	38.25	2.00e-71	263.00
IUUC-Ogu-078759	Oryza glumaepatula	40.66	2.00e-77	283.00
IUUC-Oin-079118	Oryza indica	40.71	3.00e-78	285.00
IUUC-Olo-081055	Oryza longistaminata	40.12	3.00e-68	251.00
IUUC-Ome-081281	Oryza meridionalis	40.66	2.00e-77	283.00
IUUC-Oni-083043	Oryza nivara	40.66	2.00e-77	283.00
IUUC-Oru-084839	Oryza rufipogon	40.66	2.00e-77	283.00
IUUC-Osa-085377	Oryza sativa	40.71	4.00e-78	285.00
IUUC-Ola-087029	Oryzias latipes	80.00	2.00e-156	545.00
IUUC-Oga-088610	Otolemur garnettii	80.59	0.00e+00	640.00
IUUC-Oar-089639	Ovis aries	79.57	0.00e+00	628.00
IUUC-Ptr-091023	Pan troglodytes	80.05	0.00e+00	639.00
IUUC-Pan-091727	Papio anubis	80.32	0.00e+00	644.00
IUUC-Ppa-095738	Physcomitrella patens	43.92	3.00e-85	308.00
IUUC-Pfo-097058	Poecilia formosa	80.53	0.00e+00	639.00
IUUC-Pab-098238	Pongo abelii	80.32	0.00e+00	645.00
IUUC-Pca-100580	Procavia capensis	79.51	0.00e+00	627.00
IUUC-Ppe-101681	Prunus persica	41.35	2.00e-82	299.00
IUUC-Pva-102928	Pteropus vampyrus	77.09	9.00e-174	602.00
IUUC-Rno-104846	Rattus norvegicus	79.78	0.00e+00	638.00
IUUC-Smo-108836	Selaginella moellendorffii	44.50	6.00e-84	304.00
IUUC-Sly-111048	Solanum lycopersicum	42.58	2.00e-79	289.00
IUUC-Sbi-114685	Sorghum bicolor	42.51	9.00e-78	283.00
IUUC-Tru-118106	Takifugu rubripes	80.21	0.00e+00	646.00
IUUC-Tni-120079	Tetraodon nigroviridis	80.74	0.00e+00	649.00
IUUC-Ttr-128698	Tursiops truncatus	80.32	0.00e+00	642.00
IUUC-Vvi-131647	Vitis vinifera	41.67	7.00e-82	297.00
IUUC-Xtr-131893	Xenopus tropicalis	79.62	0.00e+00	635.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence