iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099846

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000347

Gene Name

POPTRDRAFT_568369; POPTR_0011s03580g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0011s03580	POPTR_0011s03580.1	POPTR_0011s03580.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.20e-30	105.7	5	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqpl.teedlvPnltlrrliqawc 69
           +p++f+CpIsle+M+dPv+l+sG+t+drssI++wl+sg++tcP+t+ pl ++  l+Pn++lr+li+++ 
   Q: 5    LPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDSGHRTCPITKLPLpEHPCLIPNHALRSLISSFT 73
           79***********************************************555667***********997 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MATHLPDDFK CPISLEIMSD PVILSSGHTF DRSSIQRWLD SGHRTCPITK LPLPEHPCLI 60
PNHALRSLIS SFTIPKSQPD PNPCRNLNPD QSKKYQTQLL IYTLVSPSST LESKLHSLSQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGAGAGAAAC AACTCAGAAC CCAACAAAAC ACAAAACAAA ACAAAACGAA ACCCAGTTTT 60
CTTACAGCCT CAAAAGCATG GCCACTCACT TGCCTGATGA CTTCAAGTGT CCAATTTCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0011s03580g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006175	Arabidopsis lyrata	62.57	2.00e-119	421.00
IUUC-Ath-006926	Arabidopsis thaliana	62.10	4.00e-118	417.00
IUUC-Bra-017717	Brassica rapa	61.29	1.00e-89	322.00
IUUC-Gma-043375	Glycine max	60.65	1.00e-95	342.00
IUUC-Mtr-058590	Medicago truncatula	60.00	7.00e-110	389.00
IUUC-Ppe-101638	Prunus persica	66.12	3.00e-128	451.00
IUUC-Sly-111598	Solanum lycopersicum	61.11	3.00e-109	387.00
IUUC-Stu-112509	Solanum tuberosum	62.01	5.00e-107	380.00
IUUC-Tca-121293	Theobroma cacao	68.80	5.00e-137	479.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence