iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006609

Ensembl Protein ID

AT5G66240.2

UniProt Accession

Q8RXD8; Q8RXD8_ARATH

Genbank Protein ID

AAL91206.1; AAO00945.1; AED98186.1

Protein Name

Transducin/WD40 repeat-like superfamily protein; WD repeat protein-like

Genbank Nucleotide ID

AY081317; BT002585; CP002688

Gene Name

At5g66240; K1L20.2; K1L20_2

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G66240	AT5G66240.2	AT5G66240.2
AT5G66240	AT5G66240.1	AT5G66240.1
AT5G66240	AT5G66240.3	AT5G66240.3

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.40e-17	62.1	33	70

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 3    tdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllks 38
           ++++++++f  ++t +v++sdD +i+++D+ + ++lk+
   Q: 33   NCRISSIDFhkTSTCMVTASDDDSIRLYDVASATCLKT 70
           578*******755999*****************99985 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MVEFTEREDR VSLELSEEII QSMEPGAVFR DYNCRISSID FHKTSTCMVT ASDDDSIRLY 60
DVASATCLKT INSKKYGVDL VCFTSHPTTV IYSSRNGWDD SLRLLSLHDN KYLRYFKGHH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAGTTAAGGC GGTGGAAGAC GTCGATCCCT AAAGTCGAAG CCCTTGTTAG GGCTTCTATA 60
CATCACCGGC GATATTGGTT TACGCGTCGG AGAGATGGTT GGTGAGTGTT ATTGATGACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0048188--C:Set1C/COMPASS complex
GO:0003682--F:chromatin binding
GO:0080182--P:histone H3-K4 trimethylation
GO:0009827--P:plant-type cell wall modification

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000390	Aegilops tauschii	65.75	4.00e-132	463.00
IUUC-Atr-002607	Amborella trichopoda	74.69	8.00e-146	509.00
IUUC-Apl-003817	Anas platyrhynchos	41.31	1.00e-62	233.00
IUUC-Aly-005462	Arabidopsis lyrata	98.49	0.00e+00	676.00
IUUC-Bdi-014222	Brachypodium distachyon	66.06	4.00e-131	459.00
IUUC-Bol-015485	Brassica oleracea	89.94	1.00e-174	604.00
IUUC-Bra-016914	Brassica rapa	89.94	4.00e-174	602.00
IUUC-Cho-024409	Choloepus hoffmanni	37.50	6.00e-47	180.00
IUUC-Cme-027288	Cyanidioschyzon merolae	31.79	6.00e-49	187.00
IUUC-Eeu-035229	Erinaceus europaeus	34.43	2.00e-46	178.00
IUUC-Fal-036843	Ficedula albicollis	41.31	1.00e-62	233.00
IUUC-Gma-042835	Glycine max	80.18	3.00e-156	543.00
IUUC-Hvu-047690	Hordeum vulgare	64.83	4.00e-130	456.00
IUUC-Lch-050431	Latimeria chalumnae	41.10	4.00e-63	235.00
IUUC-Lpe-050812	Leersia perrieri	66.05	4.00e-126	443.00
IUUC-Laf-054265	Loxodonta africana	46.50	6.00e-50	190.00
IUUC-Mtr-058607	Medicago truncatula	76.52	3.00e-150	523.00
IUUC-Mac-064497	Musa acuminata	72.76	1.00e-140	491.00
IUUC-Oba-075229	Oryza barthii	66.36	1.00e-127	448.00
IUUC-Obr-076490	Oryza brachyantha	67.39	6.00e-128	449.00
IUUC-Ogl-077381	Oryza glaberrima	66.87	6.00e-126	442.00
IUUC-Ogu-078068	Oryza glumaepatula	67.19	7.00e-127	446.00
IUUC-Oin-079415	Oryza indica	66.67	4.00e-127	447.00
IUUC-Olo-080773	Oryza longistaminata	57.19	2.00e-102	364.00
IUUC-Ome-081277	Oryza meridionalis	54.35	5.00e-93	333.00
IUUC-Oni-082990	Oryza nivara	66.67	7.00e-128	449.00
IUUC-Opu-083374	Oryza punctata	66.77	4.00e-127	446.00
IUUC-Oru-084354	Oryza rufipogon	66.67	6.00e-128	450.00
IUUC-Osa-086154	Oryza sativa	67.08	3.00e-127	447.00
IUUC-Psi-092972	Pelodiscus sinensis	40.85	3.00e-61	229.00
IUUC-Pop-099278	Populus trichocarpa	82.20	2.00e-151	527.00
IUUC-Ppe-101860	Prunus persica	80.88	4.00e-157	546.00
IUUC-Sit-110657	Setaria italica	65.63	2.00e-128	451.00
IUUC-Sly-110867	Solanum lycopersicum	80.43	1.00e-156	544.00
IUUC-Sbi-114094	Sorghum bicolor	66.56	1.00e-129	454.00
IUUC-Tsy-119314	Tarsius syrichta	32.53	4.00e-33	134.00
IUUC-Tca-121499	Theobroma cacao	78.47	6.00e-161	560.00
IUUC-Tae-124779	Triticum aestivum	65.75	4.00e-132	463.00
IUUC-Tur-126512	Triticum urartu	67.86	2.00e-116	411.00
IUUC-Vvi-131040	Vitis vinifera	82.87	8.00e-164	569.00
IUUC-Xtr-132660	Xenopus tropicalis	40.78	8.00e-64	237.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence