iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099563

Ensembl Protein ID

POPTR_0003s21560.1

UniProt Accession

B9GYJ4; B9GYJ4_POPTR

Genbank Protein ID

EEE79861.1

Protein Name

E3 ubiquitin-protein ligase

Genbank Nucleotide ID

CM000339

Gene Name

POPTRDRAFT_555252; POPTR_0003s21560g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0003s21560	POPTR_0003s21560.1	POPTR_0003s21560.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	33.99	3.00e-41	165.00	IUUC-Dme-031700

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Populus trichocarpa

Functional Description
(View)

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Protein Sequence
(Fasta)

MAPGGIINKE EIESRIAYLD HDTGHPATSN AELRGSPFRK AATPSTGNPG KQSTSNMQDL 60
LDCPVCFTIM YPPIFQCPNG HTLCSHCRAR VKNSCPICRG ELGNIRCLAL EKIAESIELP 120

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Nucleotide Sequence
(Fasta)

ATAGAGAGAC AGTTTTACTA GCATTGACGA TCGAGGGGAA TAATACAATG GCCCCAGGAG 60
GCATCATCAA CAAGGAAGAG ATCGAGTCAC GCATTGCGTA CTTGGATCAT GATACGGGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018121--7-in-absentia-prot_TRAF-dom
IPR004162--SINA-like
IPR008974--TRAF-like
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR013010--Znf_SIAH

PROSITE

PS50089--ZF_RING_2
PS51081--ZF_SIAH

Pfam

PF03145--Sina

Gene Ontology

GO:0005634--C:nucleus
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0007275--P:multicellular organism development
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0003s21560g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006207	Arabidopsis lyrata	68.91	4.00e-133	466.00
IUUC-Ath-007049	Arabidopsis thaliana	69.45	1.00e-134	471.00
IUUC-Bol-015523	Brassica oleracea	69.77	5.00e-132	462.00
IUUC-Bra-016847	Brassica rapa	66.88	3.00e-129	454.00
IUUC-Cin-025674	Ciona intestinalis	35.20	1.00e-44	172.00
IUUC-Csv-026233	Ciona savignyi	35.60	9.00e-45	172.00
IUUC-Dme-031700	Drosophila melanogaster	34.26	3.00e-38	151.00
IUUC-Mtr-057852	Medicago truncatula	66.77	8.00e-130	455.00
IUUC-Opr-070341	Ochotona princeps	27.44	5.00e-13	67.40
IUUC-Oan-073701	Ornithorhynchus anatinus	26.67	1.00e-12	66.20
IUUC-Oga-088114	Otolemur garnettii	36.50	5.00e-44	170.00
IUUC-Ppe-101760	Prunus persica	73.63	1.00e-140	491.00
IUUC-Pva-103132	Pteropus vampyrus	29.45	7.00e-12	63.50
IUUC-Sly-111117	Solanum lycopersicum	69.35	2.00e-130	457.00
IUUC-Stu-112714	Solanum tuberosum	66.99	1.00e-127	448.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence