iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099950

Ensembl Protein ID

POPTR_0008s16110.1

UniProt Accession

A9PH58; A9PH58_POPTR

Genbank Protein ID

ABK95711.1; EEE89025.1

Protein Name

Auxin-responsive protein

Genbank Nucleotide ID

EF147705; CM000344

Gene Name

POPTRDRAFT_720961; POPTR_0008s16110g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0008s16110	POPTR_0008s16110.1	POPTR_0008s16110.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	7.00e-16	59.3	132	229

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 3    rvkvsykgeirsfaldlekpgkfedLlkavrt.lt.......................elknsevalkYeDedGDlvtlksDedldkavsl 69
           +vkv+++g+++++++dl+ + ++++L +a+++ +                         l+ se+ + YeD+dGD++ l++D++++++v  
   Q: 132  FVKVCMDGAPYLRKVDLKMYRSYQELSDALAKmFSsftmgnygaqgmidfmnesklmdLLNSSEYVPSYEDKDGDWM-LVGDVPWEMFVN- 220
           8*******************************62256699*****************88888***************.************. PP
   S: 70   laskksllrlliqk 83
                s++rl+i+k
   Q: 221  -----SCKRLRIMK 229
           .....********8 PP

Organism

Populus trichocarpa

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Protein Sequence
(Fasta)

MTTSVLGTER TDLNYKETEL CLGLPGAVGA KNEVETPNKA TGKRGFAETV DLKLNLQAKE 60
GVMDLNENIK NITSKDKNHL PAVTIKDPAK PPAKAQVVGW PPVRSYRKNV MAQKNASEEG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTAGCTAGTT AGCTTGCAAA ACAAAGAAGA GGACACGGGA AATCAGAAGC AAGGAGCTAG 60
CTATCTACAG CACCAAAAAC AACAAGCAAT AATACAAAAC ACGTTAGATC TTCCACTAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0009734--P:auxin-activated signaling pathway
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

KEGG

pop:POPTR_0008s16110g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005852	Arabidopsis lyrata	73.64	4.00e-91	326.00
IUUC-Ath-006734	Arabidopsis thaliana	70.16	3.00e-90	323.00
IUUC-Bol-015767	Brassica oleracea	70.78	3.00e-89	320.00
IUUC-Bra-017171	Brassica rapa	73.66	1.00e-91	328.00
IUUC-Gma-043505	Glycine max	77.78	2.00e-104	370.00
IUUC-Lpe-050724	Leersia perrieri	48.92	2.00e-46	178.00
IUUC-Mtr-058575	Medicago truncatula	76.09	9.00e-88	315.00
IUUC-Mac-065450	Musa acuminata	66.51	3.00e-74	270.00
IUUC-Ppa-095740	Physcomitrella patens	43.11	2.00e-33	136.00
IUUC-Ppe-101719	Prunus persica	77.96	2.00e-100	357.00
IUUC-Stu-112437	Solanum tuberosum	72.65	6.00e-91	325.00
IUUC-Tca-121826	Theobroma cacao	82.47	8.00e-111	392.00
IUUC-Tre-122196	Trichoderma reesei	38.00	1.30e-01	31.20

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence