iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Cpo-022249

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AAKN02027845

Gene Name

RNF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCPOG00000012725.3	ENSCPOT00000012847.2	ENSCPOP00000011449.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	8.10e-09	35.9	136	181

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf......kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iC++ +       +  +++ CgHvf+ +Cl       +s +++ +CP+Cr
   Q: 136  CPICMDGYseivqnGRLIVSTECGHVFCSQCL------RDSLKNANTCPTCR 181
           ********55553322255788*********9......4559*********8 PP

Organism

Cavia porcellus

Protein Sequence
(Fasta)

FSPYHPQRKR RGGTVSSRQA QKRTRETGSI PEIAMDPEPI ELEETAGDEI VDLTCESLEP 60
VVVDLTHNDS VVIVEERRRP RRTVRSQRQD HTDSCVVSSD DEELSRDRDV YVTTHAPRSA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTTCCCCTT ACCACCCTCA GAGAAAGCGT CGTGGTGGAA CAGTAAGTTC TAGACAAGCC 60
CAGAAGCGAA CTCGGGAAAC AGGCTCGATT CCCGAGATTG CCATGGATCC AGAACCCATA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005737--C:cytoplasm
GO:0016605--C:PML body
GO:0008270--F:zinc ion binding
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0090234--P:regulation of kinetochore assembly
GO:0090169--P:regulation of spindle assembly
GO:0046685--P:response to arsenic-containing substance

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000620	Aegilops tauschii	39.34	1.00e-10	60.10
IUUC-Aml-002206	Ailuropoda melanoleuca	86.08	4.00e-79	286.00
IUUC-Atr-002771	Amborella trichopoda	33.33	8.00e-10	57.00
IUUC-Apl-004120	Anas platyrhynchos	70.31	5.00e-69	253.00
IUUC-Aca-004236	Anolis carolinensis	61.90	6.00e-57	213.00
IUUC-Ame-011555	Astyanax mexicanus	54.49	8.00e-38	149.00
IUUC-Bta-012913	Bos taurus	83.42	7.00e-81	292.00
IUUC-Bdi-014655	Brachypodium distachyon	42.62	1.00e-10	60.10
IUUC-Bol-016418	Brassica oleracea	37.70	3.00e-09	55.50
IUUC-Bra-016890	Brassica rapa	36.84	6.00e-08	50.40
IUUC-Cja-019151	Callithrix jacchus	81.38	1.00e-74	271.00
IUUC-Cfa-020868	Canis familiaris	81.35	2.00e-76	277.00
IUUC-Csa-024125	Chlorocebus sabaeus	85.56	6.00e-76	276.00
IUUC-Cin-025749	Ciona intestinalis	40.98	9.00e-14	70.10
IUUC-Csv-026318	Ciona savignyi	40.98	4.00e-13	67.80
IUUC-Dre-028145	Danio rerio	45.81	7.00e-32	129.00
IUUC-Dno-029605	Dasypus novemcinctus	85.03	2.00e-82	297.00
IUUC-Dor-030898	Dipodomys ordii	87.17	9.00e-84	302.00
IUUC-Dme-032177	Drosophila melanogaster	42.37	1.00e-10	60.50
IUUC-Ete-032694	Echinops telfairi	79.68	7.00e-66	242.00
IUUC-Eca-033443	Equus caballus	87.17	2.00e-77	280.00
IUUC-Eeu-034603	Erinaceus europaeus	91.18	1.00e-52	197.00
IUUC-Fca-035507	Felis catus	85.56	9.00e-75	272.00
IUUC-Fal-037382	Ficedula albicollis	68.75	4.00e-64	237.00
IUUC-Gmo-038960	Gadus morhua	71.43	1.00e-18	85.10
IUUC-Gga-040493	Gallus gallus	65.61	6.00e-66	243.00
IUUC-Gac-042194	Gasterosteus aculeatus	51.02	1.00e-35	142.00
IUUC-Gma-042666	Glycine max	37.70	1.00e-08	52.80
IUUC-Ggo-044726	Gorilla gorilla	87.17	5.00e-77	279.00
IUUC-Hsa-046212	Homo sapiens	87.17	5.00e-77	279.00
IUUC-Hvu-047337	Hordeum vulgare	34.18	8.00e-11	60.80
IUUC-Itr-047892	Ictidomys tridecemlineatus	87.37	5.00e-78	283.00
IUUC-Lpe-050920	Leersia perrieri	37.70	2.00e-10	58.90
IUUC-Loc-051907	Lepisosteus oculatus	47.56	2.00e-34	138.00
IUUC-Laf-054145	Loxodonta africana	82.47	6.00e-75	273.00
IUUC-Mcc-055689	Macaca mulatta	86.10	8.00e-76	275.00
IUUC-Meu-056654	Macropus eugenii	43.85	1.00e-37	149.00
IUUC-Mtr-058314	Medicago truncatula	45.45	1.00e-10	59.30
IUUC-Mla-058874	Melampsora laricipopulina	42.11	2.00e-04	40.80
IUUC-Mga-059303	Meleagris gallopavo	69.11	6.00e-68	249.00
IUUC-Mmr-061355	Microcebus murinus	87.17	9.00e-77	278.00
IUUC-Mdo-062968	Monodelphis domestica	64.21	7.00e-65	239.00
IUUC-Mmu-064421	Mus musculus	84.54	2.00e-86	311.00
IUUC-Mac-064573	Musa acuminata	29.36	4.00e-12	65.10
IUUC-Mpu-066522	Mustela putorius furo	85.94	1.00e-78	285.00
IUUC-Mlu-067065	Myotis lucifugus	83.68	7.00e-75	272.00
IUUC-Nle-069198	Nomascus leucogenys	86.63	2.00e-77	280.00
IUUC-Opr-071141	Ochotona princeps	79.14	1.00e-80	291.00
IUUC-Oan-073341	Ornithorhynchus anatinus	63.45	5.00e-34	136.00
IUUC-Ocu-073787	Oryctolagus cuniculus	83.51	1.00e-85	308.00
IUUC-Oba-075460	Oryza barthii	40.32	4.00e-11	61.60
IUUC-Obr-076349	Oryza brachyantha	37.70	5.00e-10	58.20
IUUC-Ogl-077094	Oryza glaberrima	35.90	3.00e-11	62.00
IUUC-Ogu-078677	Oryza glumaepatula	40.32	3.00e-11	62.00
IUUC-Oin-079992	Oryza indica	35.90	3.00e-11	62.00
IUUC-Olo-080257	Oryza longistaminata	41.94	2.00e-11	62.40
IUUC-Ome-081943	Oryza meridionalis	35.90	3.00e-11	62.40
IUUC-Oni-082671	Oryza nivara	40.32	4.00e-11	61.60
IUUC-Opu-083644	Oryza punctata	40.32	5.00e-11	61.20
IUUC-Oru-084650	Oryza rufipogon	40.32	4.00e-11	61.60
IUUC-Osa-086110	Oryza sativa	35.90	3.00e-11	62.00
IUUC-Ola-086970	Oryzias latipes	40.70	9.00e-32	129.00
IUUC-Olu-087634	Ostreococcus lucimarinus	37.29	2.00e-10	58.50
IUUC-Oga-088242	Otolemur garnettii	86.70	6.00e-86	309.00
IUUC-Oar-089469	Ovis aries	84.54	8.00e-88	315.00
IUUC-Ptr-091254	Pan troglodytes	81.28	2.00e-70	257.00
IUUC-Pan-092919	Papio anubis	86.17	2.00e-76	277.00
IUUC-Psi-093929	Pelodiscus sinensis	68.91	4.00e-66	243.00
IUUC-Pma-094118	Petromyzon marinus	55.38	3.00e-20	89.40
IUUC-Ppa-095567	Physcomitrella patens	44.26	3.00e-11	61.60
IUUC-Pfo-097412	Poecilia formosa	46.88	1.00e-32	132.00
IUUC-Pab-098424	Pongo abelii	86.63	1.00e-76	278.00
IUUC-Pop-099483	Populus trichocarpa	37.10	3.00e-09	54.70
IUUC-Pca-100463	Procavia capensis	77.54	2.00e-42	164.00
IUUC-Ppe-101755	Prunus persica	38.71	2.00e-09	55.10
IUUC-Pva-102594	Pteropus vampyrus	78.26	5.00e-54	203.00
IUUC-Rno-105460	Rattus norvegicus	83.67	3.00e-77	280.00
IUUC-Sha-107487	Sarcophilus harrisii	68.04	9.00e-65	239.00
IUUC-Smo-108908	Selaginella moellendorffii	37.10	8.00e-08	50.10
IUUC-Sit-109959	Setaria italica	34.43	1.00e-04	40.40
IUUC-Stu-112694	Solanum tuberosum	39.06	2.00e-09	55.80
IUUC-Sar-113601	Sorex araneus	80.75	7.00e-74	269.00
IUUC-Sbi-114398	Sorghum bicolor	36.07	8.00e-05	40.40
IUUC-Ssc-115911	Sus scrofa	87.17	2.00e-76	277.00
IUUC-Tgu-117264	Taeniopygia guttata	66.32	4.00e-63	233.00
IUUC-Tru-117663	Takifugu rubripes	49.04	7.00e-35	139.00
IUUC-Tsy-118883	Tarsius syrichta	85.14	2.00e-63	234.00
IUUC-Tae-124872	Triticum aestivum	40.00	1.00e-10	60.10
IUUC-Tur-126408	Triticum urartu	40.00	1.00e-10	60.10
IUUC-Ttr-128950	Tursiops truncatus	63.64	4.00e-62	230.00
IUUC-Vvi-130833	Vitis vinifera	40.32	4.00e-10	58.20
IUUC-Xtr-132879	Xenopus tropicalis	58.17	2.00e-38	151.00
IUUC-Xma-133319	Xiphophorus maculatus	46.94	2.00e-31	127.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence