iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-100049

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000337

Gene Name

POPTRDRAFT_750621; POPTR_0001s06960g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0001s06960	POPTR_0001s06960.1	POPTR_0001s06960.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	7.50e-07	30.7	95	137

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl+d+  kd  ++ p C H+fhadC+  w       + +++CPlCr
   Q: 95   CSICLSDYqpKDTIRCIPdCHHCFHADCIDGW------LKMSATCPLCR 137
           ********98666888888*************......**********8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSTVAPPVSA SAAAGSGLGY GIAIAIGILV LISTIMLTSY ACTRIKGNGN GNGSNNNGGE 60
PMTVVVGLAE PIIDSYTKMV LGESRRLPKP NEGPCSICLS DYQPKDTIRC IPDCHHCFHA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCCACAG TTGCTCCACC AGTGTCAGCG TCGGCCGCTG CGGGCAGTGG CCTTGGTTAT 60
GGTATCGCCA TTGCCATTGG CATTCTCGTC CTCATTTCTA CTATAATGCT CACTTCTTAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0001s06960g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003007	Amborella trichopoda	46.45	1.00e-31	128.00
IUUC-Aly-006029	Arabidopsis lyrata	55.84	5.00e-46	176.00
IUUC-Ath-006726	Arabidopsis thaliana	56.49	3.00e-46	176.00
IUUC-Bol-016361	Brassica oleracea	57.89	3.00e-48	183.00
IUUC-Bra-017863	Brassica rapa	58.55	2.00e-40	157.00
IUUC-Gma-043023	Glycine max	55.56	8.00e-41	159.00
IUUC-Mtr-057943	Medicago truncatula	62.35	8.00e-54	202.00
IUUC-Mac-064609	Musa acuminata	47.53	3.00e-33	134.00
IUUC-Ont-072604	Oreochromis niloticus	50.00	9.00e-10	59.70
IUUC-Oin-079787	Oryza indica	42.21	2.00e-22	97.80
IUUC-Oru-084454	Oryza rufipogon	42.21	2.00e-22	97.80
IUUC-Ppe-101147	Prunus persica	54.19	6.00e-43	166.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence