iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111348

Ensembl Protein ID

Solyc01g079510.2.1

UniProt Accession

K4AXJ6; K4AXJ6_SOLLC

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc01g079510.2	Solyc01g079510.2.1	Solyc01g079510.2.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-27	95.6	325	364
UBD/Beta-Prp	4.10e-49	168.1	236	505

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf....sd.tllvsGsdDgtikvWDlrtgvl 35
           gH++ vt++af    s+   l+s+sdDgt+++WD r+  +
   Q: 325  GHAGAVTAIAFtpktSSvYQLLSSSDDGTCRIWDARSSQC 364
           8***********99766778**************988776 PP

UBD/Beta-Prp

   S: 2    iktlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkg 92
           ik+l+gh+++v +   f +++++++tgs+d+ +kvw+++tg +l+s  ghe+ +t++  s++  + +++s+D+ i+vw l +g ++++l+g
   Q: 236  IKKLRGHRDAVYC-AIFDRSGRYVITGSDDRLVKVWSMETGLCLASCRGHEGDITDLAVSSNNALVASASNDYSIRVWRLPDGLPISVLRG 325
           6788899997777.999************************************************************************** PP
   S: 93   hedsvlslsfsp..sg.dklvsGshdrtirvwdletgqclee.........................tlsghdgvvncvvvhpdgnllvsG 155
           h   v++++f p  s+ + l+s s+d t r+wd ++ qc+                            ++ h++ + c +++ +g ++v+G
   Q: 326  HAGAVTAIAFTPktSSvYQLLSSSDDGTCRIWDARSSQCVPRvysprpkdnvsvrssgtaatnlqssSNTSHSHQILCCAYNANGTVFVTG 416
           ************8744599************************************************************************ PP
   S: 156  slDrtvrlWdl.........ktgkllrtltgghtdsvyslsfdsng..........................kelvsgsldgtvklwdlq 210
           s D+  r+W+          + +  ++tl+g h+++v+ ++f+                               +v++s+dg+ ++w  +
   Q: 417  SSDTLARVWSAckfspdhpeELNHEIDTLSG-HENDVNYVQFSGCAvasrsstsdsfvedcipkfrnswfshDNIVTCSRDGSAIIWTPK 505
           ********************9********99.*********555555555567777888888888888999999*************755 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MDSGKCTSRN GASSSNMAHT RFLNRVYTKS LFEEEERFTE HATIKDVNID LREVYFLIMH 60
FLSSGPCRKT FGIFCDELLE HELLPRRYNA WYSRKGVLSG DDDNDISFLL NYDDLMLRYP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGAATGTAGA TTCATGGATC TTGCTCTTTG AAGAGGAATA ATCAGTGTGG GGAGTTTATT 60
TGCTAACAAA GGATGGATTC AGGGAAGTGT ACATCTAGAA ATGGTGCTTC ATCATCAAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR001487--Bromodomain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0007010--P:cytoskeleton organization
GO:0008360--P:regulation of cell shape
GO:0006357--P:regulation of transcription from RNA polymerase II promoter

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001113	Aegilops tauschii	57.85	0.00e+00	807.00
IUUC-Aml-001881	Ailuropoda melanoleuca	30.07	2.00e-71	264.00
IUUC-Atr-002600	Amborella trichopoda	70.44	0.00e+00	1069.00
IUUC-Apl-003700	Anas platyrhynchos	32.54	2.00e-66	248.00
IUUC-Aca-004474	Anolis carolinensis	32.18	1.00e-80	295.00
IUUC-Aly-006517	Arabidopsis lyrata	62.40	0.00e+00	1110.00
IUUC-Ath-006577	Arabidopsis thaliana	62.21	0.00e+00	1098.00
IUUC-Ame-010718	Astyanax mexicanus	30.64	1.00e-77	285.00
IUUC-Bta-013217	Bos taurus	30.41	5.00e-77	283.00
IUUC-Bdi-014797	Brachypodium distachyon	64.78	0.00e+00	728.00
IUUC-Bol-016525	Brassica oleracea	67.35	0.00e+00	1073.00
IUUC-Bra-017961	Brassica rapa	67.26	0.00e+00	999.00
IUUC-Cja-018868	Callithrix jacchus	32.32	3.00e-80	293.00
IUUC-Cfa-021037	Canis familiaris	30.56	1.00e-77	285.00
IUUC-Cpo-021934	Cavia porcellus	30.85	7.00e-77	282.00
IUUC-Csa-023618	Chlorocebus sabaeus	32.32	2.00e-80	294.00
IUUC-Cho-024690	Choloepus hoffmanni	27.36	4.00e-33	137.00
IUUC-Cin-025702	Ciona intestinalis	34.68	8.00e-30	123.00
IUUC-Csv-025813	Ciona savignyi	30.08	4.00e-57	215.00
IUUC-Dre-028029	Danio rerio	30.29	7.00e-75	276.00
IUUC-Dno-030048	Dasypus novemcinctus	31.71	3.00e-72	266.00
IUUC-Dme-031752	Drosophila melanogaster	27.72	9.00e-67	249.00
IUUC-Eca-034274	Equus caballus	32.71	1.00e-70	261.00
IUUC-Fca-036099	Felis catus	29.93	1.00e-71	265.00
IUUC-Fal-037307	Ficedula albicollis	30.32	1.00e-76	282.00
IUUC-Gmo-039116	Gadus morhua	27.88	3.00e-22	101.00
IUUC-Gga-040798	Gallus gallus	32.03	6.00e-76	279.00
IUUC-Gac-042435	Gasterosteus aculeatus	29.99	3.00e-64	240.00
IUUC-Gma-043340	Glycine max	65.12	0.00e+00	1143.00
IUUC-Ggo-045500	Gorilla gorilla	30.56	1.00e-77	285.00
IUUC-Hsa-046350	Homo sapiens	30.56	1.00e-77	285.00
IUUC-Itr-047962	Ictidomys tridecemlineatus	25.91	7.00e-22	98.20
IUUC-Lch-049662	Latimeria chalumnae	30.89	2.00e-79	291.00
IUUC-Lpe-051619	Leersia perrieri	68.82	0.00e+00	976.00
IUUC-Loc-052672	Lepisosteus oculatus	31.15	2.00e-78	287.00
IUUC-Laf-053848	Loxodonta africana	30.23	1.00e-76	281.00
IUUC-Mcc-054638	Macaca mulatta	30.41	3.00e-77	284.00
IUUC-Mtr-057637	Medicago truncatula	60.49	0.00e+00	1045.00
IUUC-Mga-060165	Meleagris gallopavo	30.47	4.00e-75	276.00
IUUC-Mmr-061227	Microcebus murinus	30.70	2.00e-78	287.00
IUUC-Mdo-062074	Monodelphis domestica	31.19	4.00e-77	283.00
IUUC-Mmu-064075	Mus musculus	30.85	1.00e-77	285.00
IUUC-Mac-065343	Musa acuminata	64.56	0.00e+00	1039.00
IUUC-Mpu-066628	Mustela putorius furo	30.21	2.00e-74	274.00
IUUC-Mlu-068082	Myotis lucifugus	29.93	3.00e-71	263.00
IUUC-Nle-069402	Nomascus leucogenys	30.56	3.00e-77	283.00
IUUC-Opr-070971	Ochotona princeps	27.78	2.00e-42	167.00
IUUC-Ont-072221	Oreochromis niloticus	32.18	3.00e-78	287.00
IUUC-Oan-072954	Ornithorhynchus anatinus	30.90	2.00e-80	294.00
IUUC-Ocu-074456	Oryctolagus cuniculus	31.01	1.00e-72	268.00
IUUC-Oba-075709	Oryza barthii	58.73	0.00e+00	939.00
IUUC-Obr-076619	Oryza brachyantha	59.54	0.00e+00	981.00
IUUC-Ogl-077493	Oryza glaberrima	56.56	0.00e+00	718.00
IUUC-Ogu-078641	Oryza glumaepatula	54.63	0.00e+00	666.00
IUUC-Oin-079669	Oryza indica	67.99	0.00e+00	678.00
IUUC-Olo-080755	Oryza longistaminata	56.73	0.00e+00	688.00
IUUC-Oni-082991	Oryza nivara	54.63	0.00e+00	667.00
IUUC-Opu-083233	Oryza punctata	58.65	0.00e+00	963.00
IUUC-Oru-085195	Oryza rufipogon	68.43	0.00e+00	938.00
IUUC-Ola-086648	Oryzias latipes	32.32	2.00e-79	290.00
IUUC-Olu-087745	Ostreococcus lucimarinus	34.77	7.00e-80	291.00
IUUC-Oga-089053	Otolemur garnettii	29.93	7.00e-71	262.00
IUUC-Oar-090042	Ovis aries	30.22	8.00e-72	265.00
IUUC-Ptr-091213	Pan troglodytes	30.56	2.00e-77	285.00
IUUC-Pan-092444	Papio anubis	30.56	2.00e-77	285.00
IUUC-Psi-093271	Pelodiscus sinensis	31.09	2.00e-68	254.00
IUUC-Pma-094427	Petromyzon marinus	33.53	9.00e-39	153.00
IUUC-Ppa-095793	Physcomitrella patens	55.86	0.00e+00	809.00
IUUC-Pfo-096191	Poecilia formosa	31.73	2.00e-76	281.00
IUUC-Pab-098402	Pongo abelii	32.32	3.00e-80	293.00
IUUC-Pop-099672	Populus trichocarpa	69.28	0.00e+00	1095.00
IUUC-Pca-101128	Procavia capensis	32.54	1.00e-67	251.00
IUUC-Ppe-101849	Prunus persica	61.68	0.00e+00	1154.00
IUUC-Pva-102512	Pteropus vampyrus	29.64	3.00e-71	263.00
IUUC-Rno-105687	Rattus norvegicus	30.41	4.00e-77	283.00
IUUC-Sha-106680	Sarcophilus harrisii	31.05	5.00e-77	283.00
IUUC-Sit-110017	Setaria italica	54.56	0.00e+00	736.00
IUUC-Ssc-115461	Sus scrofa	31.27	4.00e-67	250.00
IUUC-Tgu-116513	Taeniopygia guttata	30.29	6.00e-78	286.00
IUUC-Tru-117625	Takifugu rubripes	31.74	2.00e-77	284.00
IUUC-Tsy-119003	Tarsius syrichta	30.16	3.00e-60	227.00
IUUC-Tni-120716	Tetraodon nigroviridis	31.73	1.00e-79	291.00
IUUC-Tca-121615	Theobroma cacao	63.02	0.00e+00	1100.00
IUUC-Tae-125478	Triticum aestivum	67.42	0.00e+00	969.00
IUUC-Tur-126809	Triticum urartu	64.68	0.00e+00	953.00
IUUC-Ttr-128561	Tursiops truncatus	30.26	2.00e-73	271.00
IUUC-Vpa-130160	Vicugna pacos	32.02	2.00e-71	264.00
IUUC-Vvi-131332	Vitis vinifera	65.36	0.00e+00	1213.00
IUUC-Xtr-132717	Xenopus tropicalis	31.31	4.00e-81	296.00
IUUC-Xma-134120	Xiphophorus maculatus	31.94	1.00e-77	284.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence