iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Dre-027619

Ensembl Protein ID

ENSDARP00000089501.3

UniProt Accession

E7F0C0; E7F0C0_DANRE

Genbank Protein ID

ENSDARP00000089501

Protein Name

Syntaxin-binding protein 5b (tomosyn)

Genbank Nucleotide ID

CABZ01057751

Gene Name

stxbp5b

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000029234.7	ENSDART00000098731.4	ENSDARP00000089501.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.80e-11	43.4	251	280

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 5    svtclaf.sd.tllvsGsdDgtikvWDlrt 32
            ++++a+ ++ + +v++  Dgt+  W++r 
   Q: 251  AIHSVAWhHEgKQFVCSHSDGTLTTWNVRA 280
           59*****977799**************986 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MHISAFVSHS LENNMKKFNI RKVLDGLTAA SSSSSSAAAA SPQSGNDMIQ ETLQSEHFQL 60
CKTVRHGFPY QPSSMAFDPV QKILAIGTQS GALRLFGRAG VECYCQHESG SAVIQLEFLV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCGTTAGCAG CGGGGGGAAC CAGCCGAGGG GAGGGAACGG AACACACCGA AGATTGGCCA 60
AATCTAACCG GATTACTCTG CCCGTGTAGT GATTAAAATG AAAACCAAGT GACACTCGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR000664--Lethal2_giant
IPR013905--Lgl_C_dom
IPR013577--LLGL2
IPR001388--Synaptobrevin
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50892--V_SNARE
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08596--Lgl_C
PF08366--LLGL

PRINTS

PR00962--LETHAL2GIANT

SMART

SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm
GO:0016021--C:integral component of membrane
GO:0005886--C:plasma membrane
GO:0005096--F:GTPase activator activity
GO:0017137--F:Rab GTPase binding
GO:0019905--F:syntaxin binding
GO:0017157--P:regulation of exocytosis
GO:0050708--P:regulation of protein secretion
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000919	Aegilops tauschii	21.37	4.00e-20	94.00
IUUC-Aly-005994	Arabidopsis lyrata	32.26	2.00e-18	88.60
IUUC-Bdi-015011	Brachypodium distachyon	21.30	3.00e-17	84.70
IUUC-Bol-015893	Brassica oleracea	32.26	2.00e-17	85.50
IUUC-Cin-025731	Ciona intestinalis	58.58	3.00e-86	311.00
IUUC-Csv-026036	Ciona savignyi	38.16	0.00e+00	662.00
IUUC-Gac-041699	Gasterosteus aculeatus	81.47	0.00e+00	1770.00
IUUC-Gma-043398	Glycine max	30.10	2.00e-18	89.00
IUUC-Hvu-047650	Hordeum vulgare	21.30	5.00e-19	90.10
IUUC-Ont-072051	Oreochromis niloticus	78.36	0.00e+00	1767.00
IUUC-Obr-076813	Oryza brachyantha	21.70	3.00e-17	84.70
IUUC-Ome-081753	Oryza meridionalis	22.92	2.00e-10	61.60
IUUC-Opu-083377	Oryza punctata	21.63	2.00e-08	55.50
IUUC-Pfo-096618	Poecilia formosa	81.74	0.00e+00	1778.00
IUUC-Ppe-101373	Prunus persica	23.03	1.00e-24	108.00
IUUC-Pyt-104770	Pyrenophora triticirepentis	21.54	1.00e-15	79.30
IUUC-Tru-118038	Takifugu rubripes	77.87	0.00e+00	1731.00
IUUC-Tni-120014	Tetraodon nigroviridis	82.02	0.00e+00	1826.00
IUUC-Tca-121778	Theobroma cacao	22.08	1.00e-21	99.40
IUUC-Tae-125643	Triticum aestivum	21.48	5.00e-21	97.10
IUUC-Tur-126560	Triticum urartu	21.07	7.00e-17	83.20

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence