iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007291

UUCD1 version

UUC-ArT-01125

Ensembl Protein ID

AT3G62690.1

UniProt Accession

Q9LZJ6; Q9XF64; ATL5_ARATH

Genbank Protein ID

AAD33583.1; CAB83119.1; AEE80380.1; AAP75799.1

Protein Name

RING-H2 finger protein ATL5; RING-type E3 ubiquitin transferase ATL5

Genbank Nucleotide ID

AF132015; AL162651; CP002686; BT009649

Gene Name

ATL5; At3g62690; F26K9_120

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G62690	AT3G62690.1	AT3G62690.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	2.60e-09	38.3	113	155

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl++f  +d+ +vlp CgHvfh dC+  w       + + +CPlCr
   Q: 113  CSVCLSEFeeDDEGRVLPkCGHVFHVDCIDTW------FRSRSSCPLCR 155
           ********88666889999*************......999999****8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGNLFDSSKT LWGNMNHGSS RYSLNGKIML ASVIILFVAV ILILCFHSYA RWLFRRQNRR 60
IRRRISAHLR SLAAARDPTQ SSSSLSPLDP TVLEKIPIFV YSVKTHESPL EECSVCLSEF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AATTATACCA CATTAGAAAC TTCCCACTCT CTCTCTCGTT TGCTTCTTCT TCATCGTTTC 60
ACCCACTCAC TTCATTCTCT CTCTAAAACC TTCACTTTCT CTATCTATCT TCAAAACAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005769--C:early endosome
GO:0005798--C:Golgi-associated vesicle
GO:0016021--C:integral component of membrane
GO:0016020--C:membrane
GO:0005886--C:plasma membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0071470--P:cellular response to osmotic stress
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0006461--P:protein complex assembly
GO:0030100--P:regulation of endocytosis
GO:1901000--P:regulation of response to salt stress

KEGG

ath:AT3G62690

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005513	Arabidopsis lyrata	94.16	7.00e-100	355.00
IUUC-Bol-016026	Brassica oleracea	84.35	1.00e-79	288.00
IUUC-Bra-017804	Brassica rapa	86.01	1.00e-69	256.00
IUUC-Gma-043944	Glycine max	39.15	1.00e-26	112.00
IUUC-Ppe-101661	Prunus persica	50.62	2.00e-38	151.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence