iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Vda-129749

Ensembl Protein ID

EGY17648

UniProt Accession

G2WU57; G2WU57_VERDV

Genbank Protein ID

EGY17648.1

Protein Name

U3 small nucleolar RNA-associated protein

Genbank Nucleotide ID

DS572696

Gene Name

VDAG_01330

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VDAG_01330	EGY17648	EGY17648

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.20e-48	157.4	450	483
UBD/Beta-Prp	1.70e-93	312.2	276	558

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           H+ ++++++  ++ +l++++s D+t+k+W++++g
   Q: 450  HEKDINAIDVhPNgHLFATASQDKTVKIWSVKEG 483
           9999*****9977799**************9887 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkf.spdksllatgsrdgtikvwdvttgkl..................lrslsgheaevtavkfspdgkilvtgseDrtikvwdls....tg 84
           g+h++ i   ++  pd s++a g   + +++ +v                       +  l+gh++ v +++ + +g +++tg++D+ +++w ++    ++
   Q: 276  GTHDEIIDL-TYlLPDHSIMALGTNAEEVRLVSVAGSESitgahdwtaqgsryfgqdVGLLKGHDDIVLTMDVDWSGHWIATGAKDNSARLWRVDpansSF 375
           556655653.33366666666666666666666666555566666666666899999999********************************55555669* PP
   S: 85   kcvhtlkghedsvls..................lsfspsgdklvsGshdrtirvwdletgqclee.......tlsghdgvvncvvvhpdgnllvsGslDrt 160
           +c  t++gh +sv +                  ls  p   +l++Gs+d ti+ w+++ +   ++       t + h++ +n + vhp+g l++++s D+t
   Q: 376  TCYATFTGHAQSVGAvglpktipaessaqfkdpLSHPP--PFLLTGSQDMTIKKWEIPRQPQTKKggsralfTRKAHEKDINAIDVHPNGHLFATASQDKT 474
           **************************987777666666..********************99999************************************ PP
   S: 161  vrlWdlktgkllrtltgghtdsvyslsfdsng..............kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs 231
           v++W++k g++   l+g h + v s++f ++                 +++gs d+t klw+l++ +cvrt++gh++ ++ v+ +
   Q: 475  VKIWSVKEGEVQGILKG-HRRGVWSVKFAPEHtptiqgdegpvagkGVILTGSGDKTAKLWSLSSYTCVRTFEGHSNSILKVAWL 558
           ****************9.***************************999*******************************999865 PP

Organism

Verticillium dahliae

Protein Sequence
(Fasta)

MKIYALKSAD DDSITPTLVR SLKPHGTPVV VLAVDRTSTL LATGGTDGAI KVWDIAGGYV 60
THTFRGPSVL VSALKFFEVA ARAKESDTGK KSKKARHGDE EEEEEVKVGT TQFRLISGSQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAGATTT ACGCCCTGAA GTCTGCCGAC GATGACTCCA TCACACCGAC TCTCGTCCGA 60
TCCCTGAAGC CTCATGGCAC CCCCGTTGTT GTGCTGGCTG TCGACCGCAC AAGCACCCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR013934--SSU_processome_Utp13
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08625--Utp13
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000480--P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000447--P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472--P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

vda:VDAG_01330

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000765	Aegilops tauschii	28.88	1.00e-88	319.00
IUUC-Aml-002376	Ailuropoda melanoleuca	28.91	1.00e-92	332.00
IUUC-Atr-002486	Amborella trichopoda	29.78	3.00e-101	361.00
IUUC-Apl-003519	Anas platyrhynchos	29.31	2.00e-90	325.00
IUUC-Aca-004363	Anolis carolinensis	27.27	5.00e-40	156.00
IUUC-Aly-006152	Arabidopsis lyrata	28.31	2.00e-86	311.00
IUUC-Ath-006966	Arabidopsis thaliana	29.02	3.00e-89	321.00
IUUC-Ago-007746	Ashbya gossypii	33.75	9.00e-126	442.00
IUUC-Acl-008009	Aspergillus clavatus	49.17	0.00e+00	786.00
IUUC-Afl-008681	Aspergillus flavus	50.35	0.00e+00	737.00
IUUC-Afu-008798	Aspergillus fumigatus	49.77	0.00e+00	753.00
IUUC-Ani-009278	Aspergillus nidulans	48.79	0.00e+00	785.00
IUUC-Ang-009640	Aspergillus niger	48.30	0.00e+00	738.00
IUUC-Aor-010160	Aspergillus oryzae	50.23	0.00e+00	738.00
IUUC-Ate-010320	Aspergillus terreus	49.94	0.00e+00	782.00
IUUC-Bgr-012054	Blumeria graminis	57.13	0.00e+00	899.00
IUUC-Bta-012611	Bos taurus	30.14	1.00e-93	336.00
IUUC-Bci-013797	Botrytis cinerea	63.42	0.00e+00	1036.00
IUUC-Bdi-014384	Brachypodium distachyon	30.25	3.00e-105	374.00
IUUC-Bol-015097	Brassica oleracea	29.19	7.00e-86	310.00
IUUC-Bra-017798	Brassica rapa	29.28	3.00e-86	311.00
IUUC-Cel-018664	Caenorhabditis elegans	26.84	2.00e-74	271.00
IUUC-Cja-019092	Callithrix jacchus	29.89	3.00e-94	337.00
IUUC-Cfa-021040	Canis familiaris	29.67	1.00e-95	342.00
IUUC-Cpo-022529	Cavia porcellus	30.70	2.00e-94	338.00
IUUC-Cre-022986	Chlamydomonas reinhardtii	43.31	2.00e-31	125.00
IUUC-Csa-024205	Chlorocebus sabaeus	30.39	3.00e-97	347.00
IUUC-Cin-025560	Ciona intestinalis	29.87	1.00e-90	326.00
IUUC-Cgl-026481	Colletotrichum gloeosporioides	74.61	0.00e+00	1260.00
IUUC-Cne-027082	Cryptococcus neoformans	30.70	1.00e-113	402.00
IUUC-Cme-027159	Cyanidioschyzon merolae	25.18	8.00e-22	97.80
IUUC-Dre-028138	Danio rerio	28.97	2.00e-92	332.00
IUUC-Dno-029914	Dasypus novemcinctus	31.87	1.00e-40	159.00
IUUC-Dor-030685	Dipodomys ordii	31.30	3.00e-68	251.00
IUUC-Dse-031429	Dothistroma septosporum	48.76	0.00e+00	788.00
IUUC-Dme-031995	Drosophila melanogaster	25.78	1.00e-64	239.00
IUUC-Ete-033086	Echinops telfairi	33.33	2.00e-65	242.00
IUUC-Eca-034354	Equus caballus	29.80	5.00e-92	330.00
IUUC-Eeu-034832	Erinaceus europaeus	30.47	2.00e-60	225.00
IUUC-Fca-036136	Felis catus	29.41	2.00e-87	315.00
IUUC-Fal-036859	Ficedula albicollis	30.12	3.00e-99	354.00
IUUC-Fox-037863	Fusarium oxysporum	72.48	0.00e+00	1192.00
IUUC-Fso-038389	Fusarium solani	72.55	0.00e+00	1224.00
IUUC-Gmo-038711	Gadus morhua	28.62	2.00e-79	288.00
IUUC-Ggr-039820	Gaeumannomyces graminis	63.96	0.00e+00	1036.00
IUUC-Gga-040263	Gallus gallus	28.89	2.00e-96	345.00
IUUC-Gac-041291	Gasterosteus aculeatus	31.56	1.00e-101	362.00
IUUC-Gma-044026	Glycine max	29.74	9.00e-99	353.00
IUUC-Ggo-044693	Gorilla gorilla	30.41	7.00e-96	343.00
IUUC-Hsa-046048	Homo sapiens	30.41	5.00e-96	343.00
IUUC-Hvu-047608	Hordeum vulgare	30.07	2.00e-102	365.00
IUUC-Itr-048391	Ictidomys tridecemlineatus	30.40	5.00e-101	360.00
IUUC-Kpa-049209	Komagataella pastoris	33.50	2.00e-128	451.00
IUUC-Lch-050085	Latimeria chalumnae	28.66	4.00e-86	310.00
IUUC-Lpe-050945	Leersia perrieri	30.11	6.00e-101	360.00
IUUC-Loc-052679	Lepisosteus oculatus	31.92	4.00e-112	397.00
IUUC-Laf-053685	Loxodonta africana	29.29	6.00e-88	317.00
IUUC-Mcc-055861	Macaca mulatta	30.01	6.00e-94	337.00
IUUC-Meu-056820	Macropus eugenii	27.46	4.00e-40	157.00
IUUC-Mor-057234	Magnaporthe oryzae	61.54	0.00e+00	1022.00
IUUC-Mpo-057456	Magnaporthe poae	63.03	0.00e+00	789.00
IUUC-Mtr-058122	Medicago truncatula	29.36	2.00e-97	348.00
IUUC-Mla-058980	Melampsora laricipopulina	29.70	5.00e-96	343.00
IUUC-Mga-060080	Meleagris gallopavo	29.88	2.00e-97	348.00
IUUC-Mvi-060338	Microbotryum violaceum	32.75	6.00e-125	439.00
IUUC-Mmr-060762	Microcebus murinus	29.80	8.00e-94	336.00
IUUC-Mdo-061975	Monodelphis domestica	29.99	5.00e-92	330.00
IUUC-Mmu-064038	Mus musculus	29.55	2.00e-94	338.00
IUUC-Mac-065189	Musa acuminata	28.24	3.00e-99	354.00
IUUC-Mpu-066526	Mustela putorius furo	30.05	4.00e-92	330.00
IUUC-Mlu-067716	Myotis lucifugus	30.90	6.00e-103	366.00
IUUC-Nfi-068474	Neosartorya fischeri	49.94	0.00e+00	754.00
IUUC-Ncr-068826	Neurospora crassa	62.13	0.00e+00	1023.00
IUUC-Nle-069832	Nomascus leucogenys	29.92	9.00e-98	349.00
IUUC-Opr-071183	Ochotona princeps	29.16	6.00e-94	337.00
IUUC-Ont-072371	Oreochromis niloticus	31.72	7.00e-102	363.00
IUUC-Oan-073491	Ornithorhynchus anatinus	27.54	8.00e-76	276.00
IUUC-Oba-075963	Oryza barthii	29.25	1.00e-104	372.00
IUUC-Obr-076173	Oryza brachyantha	29.96	8.00e-103	366.00
IUUC-Ogl-077692	Oryza glaberrima	29.13	1.00e-103	369.00
IUUC-Ogu-078965	Oryza glumaepatula	29.25	2.00e-104	372.00
IUUC-Oin-079708	Oryza indica	29.13	7.00e-104	370.00
IUUC-Olo-080679	Oryza longistaminata	29.50	3.00e-104	371.00
IUUC-Oni-082960	Oryza nivara	29.01	1.00e-103	369.00
IUUC-Opu-083282	Oryza punctata	29.26	2.00e-100	358.00
IUUC-Oru-085224	Oryza rufipogon	29.25	2.00e-104	372.00
IUUC-Osa-085320	Oryza sativa	29.25	2.00e-104	372.00
IUUC-Ola-086370	Oryzias latipes	28.16	1.00e-30	126.00
IUUC-Olu-087814	Ostreococcus lucimarinus	26.97	2.00e-69	256.00
IUUC-Oga-088458	Otolemur garnettii	30.11	3.00e-100	357.00
IUUC-Oar-090032	Ovis aries	27.44	2.00e-70	258.00
IUUC-Ptr-090749	Pan troglodytes	30.41	3.00e-97	347.00
IUUC-Pan-091691	Papio anubis	29.13	2.00e-86	311.00
IUUC-Psi-093200	Pelodiscus sinensis	30.68	3.00e-97	347.00
IUUC-Pma-094165	Petromyzon marinus	28.09	1.00e-72	266.00
IUUC-Pno-095048	Phaeosphaeria nodorum	54.72	0.00e+00	802.00
IUUC-Ppa-095336	Physcomitrella patens	30.91	1.00e-94	339.00
IUUC-Pfo-096132	Poecilia formosa	29.64	2.00e-92	332.00
IUUC-Pab-097855	Pongo abelii	30.26	7.00e-97	346.00
IUUC-Pop-099434	Populus trichocarpa	28.17	9.00e-94	336.00
IUUC-Pca-100232	Procavia capensis	32.96	2.00e-35	142.00
IUUC-Ppe-101665	Prunus persica	30.10	5.00e-100	357.00
IUUC-Pva-102178	Pteropus vampyrus	29.82	5.00e-97	347.00
IUUC-Pgr-103288	Puccinia graminis	27.84	1.00e-87	316.00
IUUC-Ptt-103808	Puccinia triticina	28.92	1.00e-82	299.00
IUUC-Pte-104205	Pyrenophora teres	54.22	0.00e+00	867.00
IUUC-Pyt-104658	Pyrenophora triticirepentis	54.20	0.00e+00	866.00
IUUC-Rno-105617	Rattus norvegicus	30.05	1.00e-96	345.00
IUUC-Sce-106281	Saccharomyces cerevisiae	34.46	3.00e-131	460.00
IUUC-Sha-107378	Sarcophilus harrisii	28.98	2.00e-87	315.00
IUUC-Sja-107718	Schizosaccharomyces japonicus	37.56	4.00e-140	490.00
IUUC-Spo-108361	Schizosaccharomyces pombe	35.92	3.00e-126	444.00
IUUC-Ssl-108592	Sclerotinia sclerotiorum	64.00	0.00e+00	1069.00
IUUC-Smo-109257	Selaginella moellendorffii	29.59	3.00e-97	347.00
IUUC-Sit-110258	Setaria italica	30.31	2.00e-107	381.00
IUUC-Sly-111521	Solanum lycopersicum	28.36	2.00e-93	335.00
IUUC-Stu-112718	Solanum tuberosum	36.88	2.00e-22	96.30
IUUC-Sbi-114768	Sorghum bicolor	30.40	4.00e-105	374.00
IUUC-Sre-115159	Sporisorium reilianum	29.18	5.00e-87	314.00
IUUC-Ssc-116342	Sus scrofa	25.54	2.00e-40	158.00
IUUC-Tgu-117320	Taeniopygia guttata	29.27	7.00e-90	323.00
IUUC-Tru-118024	Takifugu rubripes	30.04	1.00e-94	339.00
IUUC-Tni-119971	Tetraodon nigroviridis	30.49	2.00e-92	332.00
IUUC-Tca-121248	Theobroma cacao	28.67	9.00e-98	349.00
IUUC-Tre-122079	Trichoderma reesei	71.77	0.00e+00	1190.00
IUUC-Tvi-122554	Trichoderma virens	72.13	0.00e+00	1177.00
IUUC-Tae-123690	Triticum aestivum	30.44	2.00e-103	369.00
IUUC-Tur-126436	Triticum urartu	28.99	3.00e-86	310.00
IUUC-Tme-126942	Tuber melanosporum	46.74	0.00e+00	660.00
IUUC-Ttr-128964	Tursiops truncatus	28.86	7.00e-91	326.00
IUUC-Uma-129473	Ustilago maydis	29.95	1.00e-83	302.00
IUUC-Vvi-131511	Vitis vinifera	29.81	5.00e-96	343.00
IUUC-Xtr-132816	Xenopus tropicalis	25.24	5.00e-58	217.00
IUUC-Xma-133672	Xiphophorus maculatus	30.30	4.00e-96	344.00
IUUC-Yli-134602	Yarrowia lipolytica	40.05	2.00e-157	548.00
IUUC-Zma-135559	Zea mays	29.45	9.00e-101	359.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence