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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Spo-108134
UUCD1 version UUC-ScP-00225
Ensembl Protein ID SPAC890.04c.1:pep
UniProt Accession Q9URY0; YTM1_SCHPO
Genbank Protein ID AAF40218.1; CAB63495.1
Protein Name Ribosome biogenesis protein ytm1
Genbank Nucleotide ID AF237708; CU329670
Gene Name SPAC890.04c; ytm1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
SPAC890.04c SPAC890.04c.1 SPAC890.04c.1:pep
Annotation
mRNA Expression
GEO
Protein-protein Interaction
Mentha
Post-translational Modifications (PTMs)
dbPAFdbPTMUniProt
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.90e-22 76.0 353 386
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd..tllvsGsdDgtikvWDlr 31
           gH++ v++l+  ++   +++s s+D+t++vWD+r
   Q: 353  GHKNLVSGLSAsPEnpYMFASVSHDNTCRVWDVR 386
           7999999998784444889*************97 PP
   
Organism Schizosaccharomyces pombe
Functional Description
(View)

Functional Description


     Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
 Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
Protein Sequence
(Fasta)
MDAQSAPSGQ VQVRFTTRNE DLAVGDTPIF VPTSLKRYGL SQIVNHLLKT EKPTPFDFLV 60
QGQLLKTTLD EYIVQNGLST ESILDIEYIQ STLPPAYLAS FSHDDWISGI QLTSDTILTS 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Spo-108134|E3,WD_repeat|Schizosaccharomyces pombe
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AAATCCTAGA ACCGATGAAT TCTTTCCCAA AATAAAACCT TTTTCGAGGA TAGAATCAAT 60
TGAGTCTCCT CTTCTTTTAT AAAAATATAA ACACACGATA AATCAACGAT CTAAACAAAG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Spo-108134|E3,WD_repeat|Schizosaccharomyces pombe
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08154--NLE
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0000460--P:maturation of 5.8S rRNA
GO:0000470--P:maturation of LSU-rRNA
GO:0042254--P:ribosome biogenesis
KEGG spo:SPAC890.04c
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000532 Aegilops tauschii 29.14 3.00e-43 167.00
IUUC-Aml-001997 Ailuropoda melanoleuca 29.15 5.00e-38 149.00
IUUC-Atr-002544 Amborella trichopoda 26.65 5.00e-36 143.00
IUUC-Apl-003981 Anas platyrhynchos 30.29 1.00e-37 148.00
IUUC-Aca-004370 Anolis carolinensis 30.50 5.00e-49 186.00
IUUC-Aly-006455 Arabidopsis lyrata 28.22 4.00e-41 160.00
IUUC-Ath-006669 Arabidopsis thaliana 29.12 5.00e-38 149.00
IUUC-Ago-007864 Ashbya gossypii 41.99 2.00e-94 337.00
IUUC-Acl-008177 Aspergillus clavatus 38.36 8.00e-84 301.00
IUUC-Afl-008617 Aspergillus flavus 37.92 3.00e-80 290.00
IUUC-Afu-008752 Aspergillus fumigatus 37.84 7.00e-79 285.00
IUUC-Ani-009136 Aspergillus nidulans 38.15 3.00e-83 300.00
IUUC-Ang-009701 Aspergillus niger 37.55 2.00e-77 280.00
IUUC-Aor-009884 Aspergillus oryzae 38.14 7.00e-81 292.00
IUUC-Ate-010472 Aspergillus terreus 36.79 2.00e-41 160.00
IUUC-Ame-011432 Astyanax mexicanus 29.89 9.00e-50 188.00
IUUC-Bgr-012218 Blumeria graminis 34.82 2.00e-73 267.00
IUUC-Bta-012829 Bos taurus 29.59 2.00e-42 164.00
IUUC-Bci-013953 Botrytis cinerea 37.76 1.00e-82 298.00
IUUC-Bdi-014351 Brachypodium distachyon 29.18 5.00e-39 153.00
IUUC-Bol-016190 Brassica oleracea 30.67 1.00e-38 152.00
IUUC-Bra-018095 Brassica rapa 30.17 4.00e-37 146.00
IUUC-Cel-018569 Caenorhabditis elegans 26.42 2.00e-22 97.80
IUUC-Cja-019468 Callithrix jacchus 29.60 1.00e-41 161.00
IUUC-Cfa-020471 Canis familiaris 28.97 1.00e-39 155.00
IUUC-Cpo-022260 Cavia porcellus 29.36 5.00e-41 159.00
IUUC-Cre-022614 Chlamydomonas reinhardtii 30.13 9.00e-45 172.00
IUUC-Csa-023989 Chlorocebus sabaeus 30.05 6.00e-41 159.00
IUUC-Cho-024426 Choloepus hoffmanni 27.53 2.00e-24 104.00
IUUC-Cin-025789 Ciona intestinalis 28.57 1.00e-42 164.00
IUUC-Cgl-026562 Colletotrichum gloeosporioides 41.86 5.00e-23 98.60
IUUC-Cne-027063 Cryptococcus neoformans 25.82 6.00e-29 119.00
IUUC-Dre-027907 Danio rerio 30.44 7.00e-52 196.00
IUUC-Dno-029225 Dasypus novemcinctus 28.67 7.00e-41 159.00
IUUC-Dor-031082 Dipodomys ordii 30.40 4.00e-20 90.10
IUUC-Dse-031308 Dothistroma septosporum 36.53 5.00e-81 292.00
IUUC-Dme-032189 Drosophila melanogaster 24.55 6.00e-36 142.00
IUUC-Ete-032247 Echinops telfairi 27.87 3.00e-36 144.00
IUUC-Eca-034285 Equus caballus 29.13 2.00e-41 160.00
IUUC-Eeu-035322 Erinaceus europaeus 26.60 2.00e-33 134.00
IUUC-Fca-036114 Felis catus 28.90 6.00e-41 159.00
IUUC-Fal-036891 Ficedula albicollis 29.20 5.00e-33 132.00
IUUC-Fox-037965 Fusarium oxysporum 37.74 6.00e-78 282.00
IUUC-Fso-038244 Fusarium solani 35.94 2.00e-73 268.00
IUUC-Gmo-039040 Gadus morhua 30.14 1.00e-52 198.00
IUUC-Ggr-040093 Gaeumannomyces graminis 31.78 3.00e-54 204.00
IUUC-Gga-040610 Gallus gallus 29.98 3.00e-45 173.00
IUUC-Gac-042117 Gasterosteus aculeatus 28.94 3.00e-49 187.00
IUUC-Gma-043756 Glycine max 29.26 2.00e-43 167.00
IUUC-Ggo-045179 Gorilla gorilla 30.28 2.00e-42 164.00
IUUC-Hsa-046114 Homo sapiens 30.28 9.00e-42 162.00
IUUC-Hvu-047331 Hordeum vulgare 28.06 5.00e-35 139.00
IUUC-Itr-048275 Ictidomys tridecemlineatus 29.82 2.00e-42 164.00
IUUC-Kpa-049304 Komagataella pastoris 42.47 2.00e-95 340.00
IUUC-Lch-050655 Latimeria chalumnae 30.17 3.00e-32 130.00
IUUC-Lpe-051675 Leersia perrieri 30.04 6.00e-44 170.00
IUUC-Loc-052868 Lepisosteus oculatus 29.59 8.00e-50 189.00
IUUC-Lma-053258 Leptosphaeria maculans 36.52 2.00e-76 279.00
IUUC-Laf-053993 Loxodonta africana 30.30 5.00e-43 166.00
IUUC-Mcc-055128 Macaca mulatta 25.69 6.00e-25 106.00
IUUC-Meu-056501 Macropus eugenii 31.29 7.00e-35 139.00
IUUC-Mor-057114 Magnaporthe oryzae 34.30 4.00e-68 249.00
IUUC-Mpo-057463 Magnaporthe poae 39.35 5.00e-30 122.00
IUUC-Mtr-058367 Medicago truncatula 29.49 7.00e-38 149.00
IUUC-Mla-059107 Melampsora laricipopulina 30.02 5.00e-47 179.00
IUUC-Mga-059745 Meleagris gallopavo 29.26 1.00e-42 165.00
IUUC-Mvi-060362 Microbotryum violaceum 42.24 3.00e-23 100.00
IUUC-Mdo-062257 Monodelphis domestica 29.98 3.00e-47 180.00
IUUC-Mmu-063546 Mus musculus 29.59 4.00e-43 166.00
IUUC-Mac-065540 Musa acuminata 29.48 2.00e-41 161.00
IUUC-Mpu-066284 Mustela putorius furo 29.82 3.00e-42 164.00
IUUC-Mlu-067241 Myotis lucifugus 29.59 3.00e-42 164.00
IUUC-Nfi-068260 Neosartorya fischeri 39.11 4.00e-81 293.00
IUUC-Ncr-068719 Neurospora crassa 33.74 1.00e-65 241.00
IUUC-Nle-068981 Nomascus leucogenys 30.05 1.00e-41 161.00
IUUC-Opr-071218 Ochotona princeps 28.81 8.00e-40 155.00
IUUC-Ont-071646 Oreochromis niloticus 28.67 2.00e-44 171.00
IUUC-Oan-073453 Ornithorhynchus anatinus 30.73 3.00e-51 193.00
IUUC-Ocu-074008 Oryctolagus cuniculus 29.13 4.00e-42 163.00
IUUC-Oba-075712 Oryza barthii 25.85 9.00e-32 129.00
IUUC-Obr-076721 Oryza brachyantha 30.02 9.00e-44 169.00
IUUC-Ogl-077229 Oryza glaberrima 29.05 3.00e-44 170.00
IUUC-Ogu-078977 Oryza glumaepatula 26.08 4.00e-32 130.00
IUUC-Oin-079683 Oryza indica 29.27 3.00e-44 170.00
IUUC-Olo-080291 Oryza longistaminata 27.68 2.00e-25 107.00
IUUC-Ome-081834 Oryza meridionalis 29.32 1.00e-43 168.00
IUUC-Oni-082507 Oryza nivara 28.73 1.00e-38 151.00
IUUC-Opu-083396 Oryza punctata 28.99 7.00e-43 166.00
IUUC-Oru-085220 Oryza rufipogon 28.73 7.00e-39 152.00
IUUC-Osa-085767 Oryza sativa 29.27 3.00e-44 170.00
IUUC-Ola-087420 Oryzias latipes 31.57 2.00e-53 201.00
IUUC-Olu-087740 Ostreococcus lucimarinus 29.21 3.00e-42 164.00
IUUC-Oga-088264 Otolemur garnettii 30.11 4.00e-42 163.00
IUUC-Oar-089335 Ovis aries 29.82 2.00e-42 164.00
IUUC-Ptr-091320 Pan troglodytes 30.28 9.00e-42 162.00
IUUC-Pan-092833 Papio anubis 30.28 3.00e-41 160.00
IUUC-Psi-093504 Pelodiscus sinensis 30.37 1.00e-40 158.00
IUUC-Pma-094189 Petromyzon marinus 28.54 1.00e-42 165.00
IUUC-Pno-094929 Phaeosphaeria nodorum 35.31 8.00e-73 265.00
IUUC-Ppa-095429 Physcomitrella patens 31.65 6.00e-51 192.00
IUUC-Pfo-096337 Poecilia formosa 29.71 4.00e-51 193.00
IUUC-Pab-097571 Pongo abelii 30.05 2.00e-41 161.00
IUUC-Pop-099977 Populus trichocarpa 30.72 2.00e-46 177.00
IUUC-Pca-100394 Procavia capensis 28.02 1.00e-33 134.00
IUUC-Ppe-101848 Prunus persica 28.60 1.00e-41 161.00
IUUC-Pva-102921 Pteropus vampyrus 29.20 1.00e-18 85.50
IUUC-Pgr-103637 Puccinia graminis 29.73 2.00e-49 187.00
IUUC-Ptt-103781 Puccinia triticina 30.17 6.00e-49 186.00
IUUC-Pte-104135 Pyrenophora teres 36.72 8.00e-71 260.00
IUUC-Pyt-104609 Pyrenophora triticirepentis 36.40 4.00e-75 273.00
IUUC-Rno-105114 Rattus norvegicus 29.82 3.00e-42 164.00
IUUC-Sce-106401 Saccharomyces cerevisiae 41.58 2.00e-98 350.00
IUUC-Sha-107122 Sarcophilus harrisii 30.63 3.00e-44 170.00
IUUC-Sja-107766 Schizosaccharomyces japonicus 61.70 2.00e-163 566.00
IUUC-Ssl-108398 Sclerotinia sclerotiorum 37.76 2.00e-83 301.00
IUUC-Smo-108720 Selaginella moellendorffii 30.37 1.00e-41 161.00
IUUC-Sit-110354 Setaria italica 28.22 3.00e-40 157.00
IUUC-Sly-111023 Solanum lycopersicum 27.70 4.00e-39 153.00
IUUC-Stu-112778 Solanum tuberosum 30.07 5.00e-44 169.00
IUUC-Sbi-114193 Sorghum bicolor 28.76 6.00e-39 152.00
IUUC-Sre-115002 Sporisorium reilianum 27.15 1.00e-34 138.00
IUUC-Ssc-116066 Sus scrofa 29.13 3.00e-41 160.00
IUUC-Tgu-117048 Taeniopygia guttata 29.49 1.00e-37 148.00
IUUC-Tni-119820 Tetraodon nigroviridis 29.95 6.00e-47 179.00
IUUC-Tca-121605 Theobroma cacao 29.08 4.00e-43 166.00
IUUC-Tre-121947 Trichoderma reesei 37.40 9.00e-78 281.00
IUUC-Tvi-122481 Trichoderma virens 38.02 7.00e-79 285.00
IUUC-Tae-125861 Triticum aestivum 29.36 6.00e-43 166.00
IUUC-Tur-126586 Triticum urartu 27.05 1.00e-36 145.00
IUUC-Tme-126900 Tuber melanosporum 42.06 6.00e-95 338.00
IUUC-Tbe-127736 Tupaia belangeri 26.18 3.00e-20 90.90
IUUC-Ttr-129041 Tursiops truncatus 25.69 4.00e-30 123.00
IUUC-Uma-129628 Ustilago maydis 27.29 5.00e-32 130.00
IUUC-Vpa-130260 Vicugna pacos 29.13 8.00e-42 162.00
IUUC-Vvi-131009 Vitis vinifera 29.38 3.00e-44 170.00
IUUC-Xtr-132083 Xenopus tropicalis 29.91 1.00e-43 168.00
IUUC-Xma-133094 Xiphophorus maculatus 29.71 2.00e-50 191.00
IUUC-Yli-134531 Yarrowia lipolytica 34.44 4.00e-67 246.00
IUUC-Zma-135509 Zea mays 27.46 9.00e-40 155.00
Created Date 25-Jun-2017

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