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Tag Content
UUCD2 ID IUUC-Itr-048212
UUCD1 version UUC-SpT-00342
Ensembl Protein ID ENSSTOP00000012764.2
UniProt Accession I3MMJ8; I3MMJ8_ICTTR
Genbank Protein ID ENSSTOP00000012764
Protein Name Coatomer subunit beta'
Genbank Nucleotide ID AGTP01051840
Gene Name COPB2
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSSTOG00000014231.2 ENSSTOT00000014249.2 ENSSTOP00000012764.2
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.50e-33 112.7 182 223
UBD/Beta-Prp 6.30e-72 242.3 12 291
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+c+++    d ++l+sG+dD  +k+WD+   +++++
   Q: 182  GHEKGVNCIDYysgGDkPYLISGADDRLVKIWDYQNKTCVQT 223
           8*********9999778****************999988875 PP
   

   UBD/Beta-Prp
   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkgheds 96
           ++++++++v+ +p +++++++ ++g++ vw+ +t++l+++++ ++ +v+a kf  ++++ vtg++D+ i+v++++t + vh +++h+d+
   Q: 12   ARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDY 100
           67899************************************************************************************ PP
   S: 97   vlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvy 184
           +++++++p++ ++++ s+d  i++wd+++++  +++++gh++ v+ +v++p++ n ++s+slDrt+++W+l + +   tl+g h++ v+
   Q: 101  IRCIAVHPTQPFILTSSDDMLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDnNQFASASLDRTIKVWQLGSSSPNFTLEG-HEKGVN 188
           *******************************9999**********************************************9.****** PP
   S: 185  slsfdsng..kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisva 271
           ++++ s g  ++l+sg++d+ vk+wd+q+++cv+tl+gh +nv++  f+p+  ++++gs+Dg++riW + +  l +tl++  ++v++va
   Q: 189  CIDYYSGGdkPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVA 277
           ***8887777******************************************************************************* PP
   S: 272  vlsfgdnvlvlgse 285
            l+ ++nv +  +e
   Q: 278  SLRGSNNVALGYDE 291
           *9999998755544 PP
   
Organism Ictidomys tridecemlineatus
Functional Description
(View)

Functional Description


     The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Protein Sequence
(Fasta)
PLRLDIKRKL TARSDRVKSV DLHPTEPWML ASLYNGSVCV WNHETQTLVK TFEVCDLPVR 60
AAKFVARKNW VVTGADDMQI RVFNYNTLER VHMFEAHSDY IRCIAVHPTQ PFILTSSDDM 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Itr-048212|E3,WD_repeat;UBD,Beta-Prp|Ictidomys tridecemlineatus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GCCTCTCCGA CTTGATATCA AGAGAAAGCT AACTGCTAGA TCCGATCGAG TTAAGAGTGT 60
GGATTTGCAT CCTACAGAGC CATGGATGTT GGCAAGTCTG TACAATGGCA GTGTGTGTGT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Itr-048212|E3,WD_repeat;UBD,Beta-Prp|Ictidomys tridecemlineatus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04053--Coatomer_WDAD
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:1901998--P:toxin transport
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000654 Aegilops tauschii 52.87 0.00e+00 938.00
IUUC-Aml-002154 Ailuropoda melanoleuca 96.46 0.00e+00 1784.00
IUUC-Atr-003090 Amborella trichopoda 58.84 0.00e+00 1073.00
IUUC-Apl-003976 Anas platyrhynchos 96.82 0.00e+00 1726.00
IUUC-Aca-004301 Anolis carolinensis 96.45 0.00e+00 1714.00
IUUC-Aly-006508 Arabidopsis lyrata 61.26 0.00e+00 1089.00
IUUC-Ath-007635 Arabidopsis thaliana 61.38 0.00e+00 1090.00
IUUC-Ago-007914 Ashbya gossypii 46.07 0.00e+00 756.00
IUUC-Acl-008237 Aspergillus clavatus 55.19 0.00e+00 968.00
IUUC-Afl-008535 Aspergillus flavus 56.09 0.00e+00 915.00
IUUC-Afu-008845 Aspergillus fumigatus 54.80 0.00e+00 945.00
IUUC-Ani-009135 Aspergillus nidulans 55.95 0.00e+00 918.00
IUUC-Ang-009654 Aspergillus niger 56.32 0.00e+00 862.00
IUUC-Aor-009939 Aspergillus oryzae 54.89 0.00e+00 972.00
IUUC-Ate-010355 Aspergillus terreus 54.21 0.00e+00 920.00
IUUC-Ame-010922 Astyanax mexicanus 86.26 0.00e+00 1496.00
IUUC-Bgr-012249 Blumeria graminis 53.61 0.00e+00 933.00
IUUC-Bta-013579 Bos taurus 99.16 0.00e+00 1481.00
IUUC-Bci-013866 Botrytis cinerea 55.54 0.00e+00 932.00
IUUC-Bdi-015046 Brachypodium distachyon 61.09 0.00e+00 1105.00
IUUC-Bol-015731 Brassica oleracea 61.26 0.00e+00 1107.00
IUUC-Bra-017758 Brassica rapa 61.62 0.00e+00 1108.00
IUUC-Cel-018387 Caenorhabditis elegans 65.28 0.00e+00 1176.00
IUUC-Cja-019145 Callithrix jacchus 96.91 0.00e+00 1781.00
IUUC-Cfa-020564 Canis familiaris 96.91 0.00e+00 1772.00
IUUC-Cpo-022201 Cavia porcellus 99.29 0.00e+00 1764.00
IUUC-Cre-022938 Chlamydomonas reinhardtii 58.62 0.00e+00 984.00
IUUC-Csa-023383 Chlorocebus sabaeus 98.59 0.00e+00 1178.00
IUUC-Cho-024454 Choloepus hoffmanni 92.52 0.00e+00 1407.00
IUUC-Cin-025681 Ciona intestinalis 77.67 0.00e+00 1360.00
IUUC-Csv-026012 Ciona savignyi 76.47 0.00e+00 1335.00
IUUC-Cgl-026649 Colletotrichum gloeosporioides 52.34 0.00e+00 847.00
IUUC-Cne-026986 Cryptococcus neoformans 51.63 0.00e+00 914.00
IUUC-Cme-027219 Cyanidioschyzon merolae 48.39 0.00e+00 848.00
IUUC-Dre-027846 Danio rerio 93.96 0.00e+00 1676.00
IUUC-Dor-030462 Dipodomys ordii 93.22 0.00e+00 1274.00
IUUC-Dse-031268 Dothistroma septosporum 54.91 0.00e+00 956.00
IUUC-Dme-031791 Drosophila melanogaster 72.24 0.00e+00 1266.00
IUUC-Ete-033166 Echinops telfairi 88.87 0.00e+00 1014.00
IUUC-Eca-034180 Equus caballus 96.71 0.00e+00 1714.00
IUUC-Eeu-035086 Erinaceus europaeus 85.74 0.00e+00 870.00
IUUC-Fca-036265 Felis catus 96.46 0.00e+00 1784.00
IUUC-Fal-037202 Ficedula albicollis 96.84 0.00e+00 1669.00
IUUC-Fox-037711 Fusarium oxysporum 56.83 0.00e+00 892.00
IUUC-Fso-038268 Fusarium solani 56.29 0.00e+00 889.00
IUUC-Gmo-039046 Gadus morhua 92.99 0.00e+00 1650.00
IUUC-Ggr-039863 Gaeumannomyces graminis 55.42 0.00e+00 909.00
IUUC-Gga-041112 Gallus gallus 96.72 0.00e+00 1729.00
IUUC-Gac-041733 Gasterosteus aculeatus 91.51 0.00e+00 1618.00
IUUC-Gma-042910 Glycine max 62.42 0.00e+00 1113.00
IUUC-Ggo-044984 Gorilla gorilla 96.24 0.00e+00 1769.00
IUUC-Hsa-046698 Homo sapiens 96.35 0.00e+00 1771.00
IUUC-Hvu-047669 Hordeum vulgare 70.90 1.00e-168 585.00
IUUC-Kpa-049265 Komagataella pastoris 49.19 0.00e+00 861.00
IUUC-Lch-050473 Latimeria chalumnae 90.63 0.00e+00 1705.00
IUUC-Lpe-051579 Leersia perrieri 61.79 0.00e+00 1095.00
IUUC-Loc-052675 Lepisosteus oculatus 93.50 0.00e+00 1699.00
IUUC-Lma-053218 Leptosphaeria maculans 54.66 0.00e+00 931.00
IUUC-Laf-053757 Loxodonta africana 96.69 0.00e+00 1771.00
IUUC-Mcc-054859 Macaca mulatta 96.80 0.00e+00 1779.00
IUUC-Meu-056174 Macropus eugenii 95.82 0.00e+00 752.00
IUUC-Mor-057264 Magnaporthe oryzae 55.94 0.00e+00 894.00
IUUC-Mpo-057538 Magnaporthe poae 55.67 0.00e+00 922.00
IUUC-Mtr-058310 Medicago truncatula 62.67 0.00e+00 1123.00
IUUC-Mla-058937 Melampsora laricipopulina 53.32 0.00e+00 911.00
IUUC-Mga-059875 Meleagris gallopavo 96.49 0.00e+00 1724.00
IUUC-Mvi-060240 Microbotryum violaceum 49.25 0.00e+00 917.00
IUUC-Mmr-061261 Microcebus murinus 97.02 0.00e+00 1780.00
IUUC-Mdo-062076 Monodelphis domestica 98.34 0.00e+00 1738.00
IUUC-Mmu-063324 Mus musculus 96.57 0.00e+00 1774.00
IUUC-Mac-064636 Musa acuminata 59.91 0.00e+00 1078.00
IUUC-Mpu-065961 Mustela putorius furo 96.69 0.00e+00 1781.00
IUUC-Mlu-067059 Myotis lucifugus 98.71 0.00e+00 1707.00
IUUC-Nfi-068277 Neosartorya fischeri 54.51 0.00e+00 935.00
IUUC-Ncr-068659 Neurospora crassa 52.70 0.00e+00 912.00
IUUC-Nle-069034 Nomascus leucogenys 96.69 0.00e+00 1778.00
IUUC-Opr-070334 Ochotona princeps 98.78 0.00e+00 1521.00
IUUC-Ont-071563 Oreochromis niloticus 93.00 0.00e+00 1675.00
IUUC-Oan-073416 Ornithorhynchus anatinus 98.05 0.00e+00 1657.00
IUUC-Ocu-074522 Oryctolagus cuniculus 96.80 0.00e+00 1773.00
IUUC-Oba-075760 Oryza barthii 60.12 0.00e+00 1073.00
IUUC-Obr-076201 Oryza brachyantha 61.02 0.00e+00 1102.00
IUUC-Ogl-077450 Oryza glaberrima 61.33 0.00e+00 1102.00
IUUC-Ogu-078994 Oryza glumaepatula 60.12 0.00e+00 1073.00
IUUC-Oin-079856 Oryza indica 60.82 0.00e+00 1078.00
IUUC-Olo-080731 Oryza longistaminata 59.42 0.00e+00 1057.00
IUUC-Ome-081554 Oryza meridionalis 56.87 0.00e+00 1000.00
IUUC-Oni-082324 Oryza nivara 60.12 0.00e+00 1073.00
IUUC-Opu-083400 Oryza punctata 58.08 0.00e+00 1069.00
IUUC-Oru-084829 Oryza rufipogon 60.12 0.00e+00 1073.00
IUUC-Osa-086026 Oryza sativa 61.33 0.00e+00 1104.00
IUUC-Ola-087245 Oryzias latipes 88.60 0.00e+00 1672.00
IUUC-Olu-087655 Ostreococcus lucimarinus 59.93 0.00e+00 1054.00
IUUC-Oga-088163 Otolemur garnettii 93.61 0.00e+00 1709.00
IUUC-Oar-089842 Ovis aries 99.18 0.00e+00 1767.00
IUUC-Ptr-090501 Pan troglodytes 96.57 0.00e+00 1775.00
IUUC-Pan-092011 Papio anubis 96.69 0.00e+00 1776.00
IUUC-Psi-093308 Pelodiscus sinensis 97.75 0.00e+00 1729.00
IUUC-Pma-094695 Petromyzon marinus 81.19 0.00e+00 1437.00
IUUC-Pno-094785 Phaeosphaeria nodorum 62.41 1.00e-112 400.00
IUUC-Ppa-095911 Physcomitrella patens 61.80 0.00e+00 1125.00
IUUC-Pfo-096587 Poecilia formosa 93.13 0.00e+00 1667.00
IUUC-Pab-097926 Pongo abelii 94.17 0.00e+00 1683.00
IUUC-Pop-099634 Populus trichocarpa 61.94 0.00e+00 1098.00
IUUC-Pca-100965 Procavia capensis 95.25 0.00e+00 1733.00
IUUC-Ppe-101470 Prunus persica 62.67 0.00e+00 1114.00
IUUC-Pva-102451 Pteropus vampyrus 92.32 0.00e+00 1265.00
IUUC-Pgr-103453 Puccinia graminis 53.86 0.00e+00 924.00
IUUC-Ptt-103868 Puccinia triticina 54.55 0.00e+00 922.00
IUUC-Pte-104274 Pyrenophora teres 55.45 0.00e+00 961.00
IUUC-Pyt-104794 Pyrenophora triticirepentis 54.92 0.00e+00 911.00
IUUC-Rno-105979 Rattus norvegicus 84.40 0.00e+00 1261.00
IUUC-Sce-106269 Saccharomyces cerevisiae 47.30 0.00e+00 789.00
IUUC-Sha-106905 Sarcophilus harrisii 97.65 0.00e+00 1739.00
IUUC-Sja-107838 Schizosaccharomyces japonicus 47.34 0.00e+00 832.00
IUUC-Spo-108299 Schizosaccharomyces pombe 47.66 0.00e+00 835.00
IUUC-Smo-108695 Selaginella moellendorffii 61.73 0.00e+00 1071.00
IUUC-Sit-110692 Setaria italica 61.97 0.00e+00 1102.00
IUUC-Sly-111775 Solanum lycopersicum 62.20 0.00e+00 1090.00
IUUC-Stu-112906 Solanum tuberosum 61.97 0.00e+00 986.00
IUUC-Sar-113472 Sorex araneus 91.26 0.00e+00 1158.00
IUUC-Sbi-114052 Sorghum bicolor 63.29 0.00e+00 1114.00
IUUC-Sre-115040 Sporisorium reilianum 52.44 0.00e+00 912.00
IUUC-Ssc-115593 Sus scrofa 97.02 0.00e+00 1782.00
IUUC-Tgu-117239 Taeniopygia guttata 96.71 0.00e+00 1723.00
IUUC-Tru-118025 Takifugu rubripes 91.71 0.00e+00 1666.00
IUUC-Tsy-118824 Tarsius syrichta 90.59 0.00e+00 1165.00
IUUC-Tni-120142 Tetraodon nigroviridis 92.89 0.00e+00 1655.00
IUUC-Tca-121613 Theobroma cacao 62.06 0.00e+00 1107.00
IUUC-Tre-122072 Trichoderma reesei 55.12 0.00e+00 935.00
IUUC-Tvi-122546 Trichoderma virens 54.62 0.00e+00 919.00
IUUC-Tae-125321 Triticum aestivum 61.39 0.00e+00 1090.00
IUUC-Tur-126283 Triticum urartu 53.95 0.00e+00 940.00
IUUC-Tme-127041 Tuber melanosporum 56.54 0.00e+00 973.00
IUUC-Tbe-127770 Tupaia belangeri 92.32 0.00e+00 1272.00
IUUC-Ttr-129294 Tursiops truncatus 95.75 0.00e+00 1771.00
IUUC-Uma-129351 Ustilago maydis 50.98 0.00e+00 902.00
IUUC-Vda-129716 Verticillium dahliae 55.49 0.00e+00 956.00
IUUC-Vpa-130037 Vicugna pacos 87.85 0.00e+00 913.00
IUUC-Vvi-131689 Vitis vinifera 61.26 0.00e+00 1109.00
IUUC-Xtr-132633 Xenopus tropicalis 91.88 0.00e+00 1682.00
IUUC-Xma-133347 Xiphophorus maculatus 87.98 0.00e+00 1672.00
IUUC-Yli-134455 Yarrowia lipolytica 50.25 0.00e+00 836.00
IUUC-Zma-135706 Zea mays 61.97 0.00e+00 1121.00
Created Date 25-Jun-2017

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