iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Obr-076163

Ensembl Protein ID

OB02G17580.1

UniProt Accession

J3LAU1; J3LAU1_ORYBR

Protein Name

Coatomer subunit beta'

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OB02G17580	OB02G17580.1	OB02G17580.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.90e-34	116.8	227	258
UBD/Beta-Prp	1.00e-66	225.9	14	288

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gH+  +++++f ++ +++++Gs Dgt+++W  
   Q: 227  GHAHNISAVCFhPElPIILTGSEDGTVRLWHS 258
           8***********999***************75 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsps 105
           +++++++v+ +p +++++++ ++g++ +w+++t+++++s++  e +v++ kf+ ++++ v g++D++i+v++++t + v ++++h+d++++++++p+
   Q: 14   RSERVKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT 110
           5678999****************************************************************************************** PP
   S: 106  gdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgs 199
           + +++s s+d  i++wd+++g+   ++++gh++ v+ v+++p++ n ++s+slDrtv++W+l + +   tl g h + v++++     ++++l++gs
   Q: 111  QPFVLSSSDDMLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTVKVWSLGSPDPNFTLDG-HSKGVNCVDyfTGGDRPYLITGS 206
           **********************9999**********************************************9.*********7445566******* PP
   S: 200  ldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlv 281
           +d+t k+wd+qt++cv+tl+gh  n++ v f+p+  ++++gs+Dg++r+W +++  l +tl++  ++v++  +++ +++v++
   Q: 207  DDQTAKVWDYQTKSCVQTLEGHAHNISAVCFHPELPIILTGSEDGTVRLWHSTTYRLENTLNYGLERVWALGYMKGSRRVVI 288
           *********************************************************************9999666666654 PP

Organism

Oryza brachyantha

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MPLRLDIKRK LAQRSERVKS VDLHPTEPWI LSSLYSGSVC IWNYQTQTMV KSFEVTELPV 60
RSAKFIARKQ WVVAGADDMF IRVYNYNTMD KVKVFEAHTD YIRCVAVHPT QPFVLSSSDD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTACGTC CCTCCCTCTC GCTCGCATTC CGCGCCGGAC GTCTCCCTCC CCCCCCGGGC 60
TAGGCGTCGT CTATGTCTCG GCGCGAATGA GGGGGATCGG GACGGCGGGG CTGAGCCGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

KEGG

obr:102716286

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003090	Amborella trichopoda	80.00	0.00e+00	1457.00
IUUC-Aly-006508	Arabidopsis lyrata	80.17	0.00e+00	1498.00
IUUC-Ath-007635	Arabidopsis thaliana	79.37	0.00e+00	1488.00
IUUC-Ago-007914	Ashbya gossypii	46.57	0.00e+00	723.00
IUUC-Afl-008535	Aspergillus flavus	52.74	0.00e+00	844.00
IUUC-Aor-009939	Aspergillus oryzae	51.92	0.00e+00	908.00
IUUC-Ate-010355	Aspergillus terreus	52.68	0.00e+00	870.00
IUUC-Bgr-012249	Blumeria graminis	52.79	0.00e+00	867.00
IUUC-Bta-013579	Bos taurus	62.10	0.00e+00	964.00
IUUC-Bci-013866	Botrytis cinerea	50.81	0.00e+00	869.00
IUUC-Bdi-015046	Brachypodium distachyon	89.55	0.00e+00	1658.00
IUUC-Bol-016271	Brassica oleracea	80.13	0.00e+00	1508.00
IUUC-Cel-018387	Caenorhabditis elegans	55.56	0.00e+00	957.00
IUUC-Cfa-020564	Canis familiaris	62.12	0.00e+00	1103.00
IUUC-Cpo-022201	Cavia porcellus	62.08	0.00e+00	1101.00
IUUC-Csa-023383	Chlorocebus sabaeus	65.79	0.00e+00	837.00
IUUC-Cho-024454	Choloepus hoffmanni	59.43	0.00e+00	926.00
IUUC-Cin-025681	Ciona intestinalis	59.36	0.00e+00	990.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	48.60	0.00e+00	783.00
IUUC-Cne-026986	Cryptococcus neoformans	49.88	0.00e+00	850.00
IUUC-Dor-030462	Dipodomys ordii	59.52	0.00e+00	852.00
IUUC-Ete-033166	Echinops telfairi	58.57	0.00e+00	705.00
IUUC-Eca-034180	Equus caballus	60.43	0.00e+00	1057.00
IUUC-Fca-036265	Felis catus	62.12	0.00e+00	1102.00
IUUC-Fox-037711	Fusarium oxysporum	53.19	0.00e+00	832.00
IUUC-Fso-038268	Fusarium solani	52.53	0.00e+00	837.00
IUUC-Ggr-039863	Gaeumannomyces graminis	53.19	0.00e+00	857.00
IUUC-Gma-044126	Glycine max	82.86	0.00e+00	1554.00
IUUC-Ggo-044984	Gorilla gorilla	62.00	0.00e+00	1102.00
IUUC-Hsa-046698	Homo sapiens	61.88	0.00e+00	1101.00
IUUC-Hvu-047669	Hordeum vulgare	95.76	0.00e+00	729.00
IUUC-Kpa-049265	Komagataella pastoris	50.12	0.00e+00	839.00
IUUC-Lch-050473	Latimeria chalumnae	63.50	0.00e+00	1105.00
IUUC-Lpe-051579	Leersia perrieri	94.78	0.00e+00	1701.00
IUUC-Lma-053218	Leptosphaeria maculans	51.96	0.00e+00	857.00
IUUC-Mcc-054859	Macaca mulatta	62.00	0.00e+00	1102.00
IUUC-Mor-057264	Magnaporthe oryzae	53.43	0.00e+00	843.00
IUUC-Mpo-057538	Magnaporthe poae	52.83	0.00e+00	862.00
IUUC-Mtr-058618	Medicago truncatula	83.33	0.00e+00	1523.00
IUUC-Mvi-060240	Microbotryum violaceum	47.72	0.00e+00	874.00
IUUC-Mpu-065961	Mustela putorius furo	60.70	0.00e+00	1102.00
IUUC-Mlu-067059	Myotis lucifugus	61.28	0.00e+00	1090.00
IUUC-Nfi-068277	Neosartorya fischeri	50.51	0.00e+00	875.00
IUUC-Nle-069034	Nomascus leucogenys	62.00	0.00e+00	1101.00
IUUC-Opr-070334	Ochotona princeps	63.36	0.00e+00	1003.00
IUUC-Oan-073416	Ornithorhynchus anatinus	62.52	0.00e+00	1045.00
IUUC-Ocu-074522	Oryctolagus cuniculus	62.12	0.00e+00	1100.00
IUUC-Ogl-077450	Oryza glaberrima	83.74	0.00e+00	1548.00
IUUC-Ogu-078994	Oryza glumaepatula	82.97	0.00e+00	1522.00
IUUC-Olo-080731	Oryza longistaminata	81.82	0.00e+00	1500.00
IUUC-Oni-082324	Oryza nivara	82.97	0.00e+00	1523.00
IUUC-Opu-083400	Oryza punctata	92.08	0.00e+00	1702.00
IUUC-Osa-086026	Oryza sativa	84.13	0.00e+00	1539.00
IUUC-Ola-087245	Oryzias latipes	62.30	0.00e+00	1096.00
IUUC-Olu-087655	Ostreococcus lucimarinus	66.38	0.00e+00	1132.00
IUUC-Oga-088163	Otolemur garnettii	59.95	0.00e+00	1047.00
IUUC-Oar-089842	Ovis aries	62.00	0.00e+00	1103.00
IUUC-Ptr-090501	Pan troglodytes	62.00	0.00e+00	1102.00
IUUC-Pma-094695	Petromyzon marinus	57.41	0.00e+00	970.00
IUUC-Pno-094785	Phaeosphaeria nodorum	56.70	8.00e-103	366.00
IUUC-Pfo-096587	Poecilia formosa	62.59	0.00e+00	1101.00
IUUC-Ppe-101470	Prunus persica	82.59	0.00e+00	1560.00
IUUC-Pva-102451	Pteropus vampyrus	58.47	0.00e+00	846.00
IUUC-Pgr-103453	Puccinia graminis	53.91	0.00e+00	895.00
IUUC-Ptt-103868	Puccinia triticina	54.03	0.00e+00	894.00
IUUC-Pte-104274	Pyrenophora teres	53.50	0.00e+00	878.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	50.67	0.00e+00	826.00
IUUC-Rno-105979	Rattus norvegicus	52.84	0.00e+00	811.00
IUUC-Sce-106269	Saccharomyces cerevisiae	47.61	0.00e+00	743.00
IUUC-Spo-108299	Schizosaccharomyces pombe	47.09	0.00e+00	788.00
IUUC-Smo-108695	Selaginella moellendorffii	79.41	0.00e+00	1349.00
IUUC-Sit-110692	Setaria italica	89.94	0.00e+00	1649.00
IUUC-Stu-112906	Solanum tuberosum	80.66	0.00e+00	1382.00
IUUC-Sar-113472	Sorex araneus	56.61	0.00e+00	754.00
IUUC-Sre-115040	Sporisorium reilianum	52.31	0.00e+00	879.00
IUUC-Ssc-115593	Sus scrofa	62.00	0.00e+00	1102.00
IUUC-Tsy-118824	Tarsius syrichta	58.57	0.00e+00	788.00
IUUC-Tni-120142	Tetraodon nigroviridis	62.22	0.00e+00	1089.00
IUUC-Tca-121613	Theobroma cacao	83.79	0.00e+00	1572.00
IUUC-Tae-125385	Triticum aestivum	90.84	0.00e+00	1663.00
IUUC-Tme-127041	Tuber melanosporum	52.64	0.00e+00	885.00
IUUC-Tbe-127770	Tupaia belangeri	60.75	0.00e+00	886.00
IUUC-Ttr-129294	Tursiops truncatus	61.88	0.00e+00	1099.00
IUUC-Uma-129351	Ustilago maydis	50.85	0.00e+00	872.00
IUUC-Vda-129716	Verticillium dahliae	53.51	0.00e+00	890.00
IUUC-Xtr-132633	Xenopus tropicalis	62.35	0.00e+00	1104.00
IUUC-Xma-133347	Xiphophorus maculatus	62.84	0.00e+00	1103.00
IUUC-Yli-134455	Yarrowia lipolytica	49.87	0.00e+00	802.00
IUUC-Zma-135867	Zea mays	89.65	0.00e+00	1672.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence