iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ncr-068799

Ensembl Protein ID

EAA32676

UniProt Accession

P0C224; P13117; Q7RVR9; Q7RVX5; Q7RWD8; RL40_NEUCR

Genbank Protein ID

EAA32676.3

Protein Name

Ubiquitin-60S ribosomal protein L40; Ubiquitin; 60S ribosomal protein L40; CEP52; Cytoplasmic ribosomal protein 79

Genbank Nucleotide ID

CM002239

Gene Name

crp-79; NCU05275

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
NCU05275	EAA32676	EAA32676

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/NEDD8	1.20e-41	139.9	1	76
ULD/UDP/UBQ/UBQ_PIM	3.30e-29	99.7	1	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           m+i+vktLtgk+i++e+e+sdti+++k+++++keGiPP+qqrli+aGkqled++t++dyn++k+s+LhLvL+LrGG
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
           89*************************************************************************9 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+++dt+ ++K+ki+++ g+pp+qq+LI+aGk+L+D +tLs+++i+++s++hlv++ 
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
           99********************************************************************986 PP

Organism

Neurospora crassa

Functional Description
(View)

Ribosomal protein L40 is part of the 60S ribosomal subunit.

Protein Sequence
(Fasta)

MQIFVKTLTG KTITLEVESS DTIDNVKQKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN 60
IQKESTLHLV LRLRGGIIEP SLKALASKFN CDKMICRKCY ARLPPRATNC RKRKCGHTNQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATAACCCCAC CATCATAGCT TCGTCCTGTT GCTGTTCCCC GACATCATCA CATCACTCCC 60
TCCTTCACCA CTGCACCTCC AACTGACCAC ACCTAGGAAT AACCGGTCAA GAGTAAGTTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein
KW-0832--Ubl conjugation

Interpro

IPR001975--Ribosomal_L40e
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF01020--Ribosomal_L40e
PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM01377--Ribosomal_L40e
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0005840--C:ribosome
GO:0003735--F:structural constituent of ribosome
GO:0006412--P:translation

KEGG

ncr:NCU05275

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001006	Aegilops tauschii	58.94	2.00e-45	172.00
IUUC-Aml-001246	Ailuropoda melanoleuca	90.62	6.00e-66	240.00
IUUC-Atr-003081	Amborella trichopoda	72.09	2.00e-44	168.00
IUUC-Apl-004069	Anas platyrhynchos	87.95	7.00e-41	155.00
IUUC-Ath-007098	Arabidopsis thaliana	90.62	1.00e-65	239.00
IUUC-Ago-007932	Ashbya gossypii	96.09	3.00e-70	254.00
IUUC-Acl-008350	Aspergillus clavatus	88.72	6.00e-66	240.00
IUUC-Afl-008554	Aspergillus flavus	95.31	6.00e-70	254.00
IUUC-Afu-008984	Aspergillus fumigatus	93.75	2.00e-68	248.00
IUUC-Ang-009609	Aspergillus niger	95.31	2.00e-69	251.00
IUUC-Aor-009991	Aspergillus oryzae	93.70	1.00e-67	246.00
IUUC-Ate-010252	Aspergillus terreus	95.20	2.00e-68	250.00
IUUC-Ame-010785	Astyanax mexicanus	89.47	3.00e-48	181.00
IUUC-Bgr-012115	Blumeria graminis	93.60	2.00e-67	245.00
IUUC-Bta-013360	Bos taurus	90.62	6.00e-66	240.00
IUUC-Bci-013851	Botrytis cinerea	96.88	7.00e-71	256.00
IUUC-Bdi-014499	Brachypodium distachyon	90.62	4.00e-66	241.00
IUUC-Bol-015961	Brassica oleracea	91.41	2.00e-66	241.00
IUUC-Cel-018677	Caenorhabditis elegans	89.06	2.00e-65	238.00
IUUC-Cja-019572	Callithrix jacchus	90.62	6.00e-66	240.00
IUUC-Cfa-020339	Canis familiaris	90.62	6.00e-66	240.00
IUUC-Cpo-021534	Cavia porcellus	90.62	6.00e-66	240.00
IUUC-Cre-022567	Chlamydomonas reinhardtii	90.62	1.00e-65	239.00
IUUC-Csa-023398	Chlorocebus sabaeus	90.62	6.00e-66	240.00
IUUC-Cin-025266	Ciona intestinalis	91.41	4.00e-67	244.00
IUUC-Csv-026105	Ciona savignyi	91.34	8.00e-67	243.00
IUUC-Cgl-026502	Colletotrichum gloeosporioides	99.20	3.00e-70	257.00
IUUC-Cne-026913	Cryptococcus neoformans	93.75	8.00e-69	249.00
IUUC-Cme-027344	Cyanidioschyzon merolae	91.21	7.00e-45	170.00
IUUC-Dre-028761	Danio rerio	90.62	7.00e-66	240.00
IUUC-Dno-028899	Dasypus novemcinctus	90.62	3.00e-65	238.00
IUUC-Dor-030658	Dipodomys ordii	96.05	1.00e-38	149.00
IUUC-Dme-031588	Drosophila melanogaster	92.19	1.00e-66	243.00
IUUC-Ete-033120	Echinops telfairi	90.62	6.00e-66	240.00
IUUC-Eca-033787	Equus caballus	90.62	6.00e-66	240.00
IUUC-Fca-035725	Felis catus	90.62	6.00e-66	240.00
IUUC-Fox-037870	Fusarium oxysporum	99.22	5.00e-72	260.00
IUUC-Fso-038461	Fusarium solani	98.75	3.00e-42	160.00
IUUC-Gmo-039163	Gadus morhua	91.41	2.00e-66	242.00
IUUC-Ggr-040034	Gaeumannomyces graminis	99.22	5.00e-72	261.00
IUUC-Gga-040909	Gallus gallus	89.06	3.00e-65	238.00
IUUC-Gac-041640	Gasterosteus aculeatus	91.41	2.00e-66	241.00
IUUC-Gma-043254	Glycine max	91.41	6.00e-67	244.00
IUUC-Ggo-045411	Gorilla gorilla	90.62	6.00e-66	240.00
IUUC-Hsa-046609	Homo sapiens	71.53	1.00e-50	189.00
IUUC-Hvu-047579	Hordeum vulgare	69.85	5.00e-51	191.00
IUUC-Itr-048586	Ictidomys tridecemlineatus	90.62	3.00e-66	243.00
IUUC-Kpa-049279	Komagataella pastoris	95.31	7.00e-70	253.00
IUUC-Lch-049971	Latimeria chalumnae	91.41	1.00e-66	244.00
IUUC-Lpe-051472	Leersia perrieri	79.70	2.00e-52	198.00
IUUC-Loc-052117	Lepisosteus oculatus	91.41	2.00e-66	242.00
IUUC-Lma-053049	Leptosphaeria maculans	96.88	8.00e-71	256.00
IUUC-Laf-054284	Loxodonta africana	90.62	2.00e-66	243.00
IUUC-Mcc-055710	Macaca mulatta	89.23	8.00e-65	238.00
IUUC-Meu-056411	Macropus eugenii	90.62	6.00e-66	240.00
IUUC-Mor-057008	Magnaporthe oryzae	97.66	7.00e-71	256.00
IUUC-Mpo-057360	Magnaporthe poae	97.66	3.00e-71	258.00
IUUC-Mtr-058437	Medicago truncatula	90.62	1.00e-65	239.00
IUUC-Mla-059080	Melampsora laricipopulina	93.00	2.00e-51	191.00
IUUC-Mmr-061335	Microcebus murinus	85.16	1.00e-59	219.00
IUUC-Mdo-062752	Monodelphis domestica	90.62	6.00e-66	240.00
IUUC-Mmu-063548	Mus musculus	90.62	2.00e-66	243.00
IUUC-Mac-064915	Musa acuminata	90.62	6.00e-66	240.00
IUUC-Mpu-066513	Mustela putorius furo	90.62	6.00e-66	240.00
IUUC-Mlu-068010	Myotis lucifugus	89.06	1.00e-64	235.00
IUUC-Nfi-068358	Neosartorya fischeri	95.24	3.00e-68	248.00
IUUC-Opr-070655	Ochotona princeps	90.62	6.00e-66	240.00
IUUC-Ont-072180	Oreochromis niloticus	91.27	4.00e-65	238.00
IUUC-Oan-073196	Ornithorhynchus anatinus	90.62	6.00e-66	240.00
IUUC-Oba-075092	Oryza barthii	91.41	1.00e-66	242.00
IUUC-Obr-076156	Oryza brachyantha	91.41	2.00e-66	243.00
IUUC-Ogl-077471	Oryza glaberrima	91.41	1.00e-66	242.00
IUUC-Ogu-078259	Oryza glumaepatula	91.41	1.00e-66	242.00
IUUC-Oin-079901	Oryza indica	91.41	1.00e-66	242.00
IUUC-Ome-081343	Oryza meridionalis	91.41	1.00e-66	242.00
IUUC-Oni-082301	Oryza nivara	75.68	8.00e-34	134.00
IUUC-Opu-083839	Oryza punctata	64.93	1.00e-36	146.00
IUUC-Oru-085252	Oryza rufipogon	91.41	1.00e-66	242.00
IUUC-Osa-085747	Oryza sativa	78.36	1.00e-51	193.00
IUUC-Ola-086333	Oryzias latipes	91.41	2.00e-66	241.00
IUUC-Olu-087819	Ostreococcus lucimarinus	85.94	8.00e-63	229.00
IUUC-Oga-088027	Otolemur garnettii	90.62	6.00e-66	240.00
IUUC-Oar-090419	Ovis aries	90.62	6.00e-66	240.00
IUUC-Ptr-091593	Pan troglodytes	90.62	6.00e-66	240.00
IUUC-Pan-091806	Papio anubis	87.50	3.00e-62	228.00
IUUC-Psi-093654	Pelodiscus sinensis	90.62	6.00e-66	240.00
IUUC-Ppa-095174	Physcomitrella patens	90.62	8.00e-66	239.00
IUUC-Pfo-096492	Poecilia formosa	91.41	3.00e-66	241.00
IUUC-Pab-098004	Pongo abelii	90.62	6.00e-66	240.00
IUUC-Pop-098929	Populus trichocarpa	90.62	6.00e-66	240.00
IUUC-Ppe-101497	Prunus persica	91.41	2.00e-66	241.00
IUUC-Pva-102945	Pteropus vampyrus	90.62	6.00e-66	240.00
IUUC-Pgr-103268	Puccinia graminis	92.97	7.00e-69	251.00
IUUC-Ptt-103804	Puccinia triticina	93.07	3.00e-53	198.00
IUUC-Pte-104101	Pyrenophora teres	95.31	6.00e-70	254.00
IUUC-Pyt-104639	Pyrenophora triticirepentis	95.31	1.00e-69	252.00
IUUC-Rno-105290	Rattus norvegicus	90.62	6.00e-66	240.00
IUUC-Sce-106249	Saccharomyces cerevisiae	96.88	9.00e-71	256.00
IUUC-Sha-106570	Sarcophilus harrisii	90.62	6.00e-66	240.00
IUUC-Sja-107834	Schizosaccharomyces japonicus	96.88	7.00e-71	256.00
IUUC-Spo-108045	Schizosaccharomyces pombe	96.09	5.00e-70	254.00
IUUC-Ssl-108670	Sclerotinia sclerotiorum	97.66	3.00e-71	257.00
IUUC-Sit-110085	Setaria italica	88.89	4.00e-65	239.00
IUUC-Sly-111884	Solanum lycopersicum	90.62	6.00e-66	240.00
IUUC-Stu-112385	Solanum tuberosum	90.08	4.00e-62	227.00
IUUC-Sar-112942	Sorex araneus	89.84	1.00e-65	239.00
IUUC-Sbi-114790	Sorghum bicolor	90.62	5.00e-66	240.00
IUUC-Sre-114908	Sporisorium reilianum	94.53	8.00e-69	249.00
IUUC-Ssc-116417	Sus scrofa	90.62	6.00e-66	240.00
IUUC-Tru-117557	Takifugu rubripes	91.41	3.00e-66	241.00
IUUC-Tni-119715	Tetraodon nigroviridis	91.41	3.00e-66	241.00
IUUC-Tca-121404	Theobroma cacao	91.41	2.00e-66	241.00
IUUC-Tvi-122611	Trichoderma virens	97.66	2.00e-71	258.00
IUUC-Tae-123019	Triticum aestivum	73.89	2.00e-61	225.00
IUUC-Tur-126527	Triticum urartu	90.62	4.00e-66	241.00
IUUC-Tme-127138	Tuber melanosporum	96.80	1.00e-69	253.00
IUUC-Tbe-127851	Tupaia belangeri	96.05	6.00e-39	150.00
IUUC-Ttr-128939	Tursiops truncatus	90.62	6.00e-66	240.00
IUUC-Uma-129619	Ustilago maydis	94.53	8.00e-69	249.00
IUUC-Vda-129775	Verticillium dahliae	96.03	7.00e-69	250.00
IUUC-Vvi-131414	Vitis vinifera	91.41	2.00e-66	241.00
IUUC-Xtr-131921	Xenopus tropicalis	90.62	6.00e-66	240.00
IUUC-Xma-134071	Xiphophorus maculatus	91.41	3.00e-66	241.00
IUUC-Yli-134671	Yarrowia lipolytica	96.09	4.00e-70	254.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence