iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006851

Ensembl Protein ID

AT5G53500.2

UniProt Accession

Q9FJD3; Q9FJD3_ARATH

Genbank Protein ID

AAM14068.1; AAN13109.1; AED96370.1; ANM69132.1; BAB09726.1

Protein Name

Putative uncharacterized protein At5g53500; Similarity to unknown protein; Transducin/WD40 repeat-like superfamily protein

Genbank Nucleotide ID

AY091118; AY142508; CP002688; CP002688; AB015476

Gene Name

MNC6.4; MNC6_4; At5g53500

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G53500	AT5G53500.2	AT5G53500.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.30e-29	101.9	326	362

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvll 36
           gHt++v ++++  d++l+s+s D+t+++W + ++++l
   Q: 326  GHTGEVLDISWsKDNYLLSASMDKTVRLWKVGSNDCL 362
           8**********877****************9999886 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDYLSQEEDL QFFDANEEMM ALNPSGFGFD VWNDSPGSVV ERRRKFLEWM GVEEEGRVET 60
KDSVSGSSVE SCFDGGEENS VEAEERSGEC SSSSSEVSLS GSSVEVSEEL SLRVDRNVGG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGTGATTAA TAGATTTAAT TACCGAATAA TCTGAAGAGA AGAAAACAAA ATTGAAATAA 60
AGACAGAGAG GTTAAATAAG GCAAAGCAAA CGGTCACACA CAAAGATTCG TCTCCAAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000337	Aegilops tauschii	48.01	1.00e-130	459.00
IUUC-Atr-002755	Amborella trichopoda	52.34	2.00e-138	485.00
IUUC-Aly-006365	Arabidopsis lyrata	94.34	0.00e+00	1167.00
IUUC-Bdi-014709	Brachypodium distachyon	46.78	2.00e-136	478.00
IUUC-Bol-016589	Brassica oleracea	77.44	0.00e+00	981.00
IUUC-Bra-016941	Brassica rapa	78.23	0.00e+00	1000.00
IUUC-Ete-032457	Echinops telfairi	30.06	1.00e-36	147.00
IUUC-Oan-072824	Ornithorhynchus anatinus	32.53	6.00e-39	155.00
IUUC-Oba-075132	Oryza barthii	45.30	8.00e-127	447.00
IUUC-Obr-076155	Oryza brachyantha	44.94	1.00e-134	473.00
IUUC-Ogl-077472	Oryza glaberrima	45.30	8.00e-127	447.00
IUUC-Ogu-078784	Oryza glumaepatula	45.30	6.00e-127	447.00
IUUC-Oin-079381	Oryza indica	46.92	1.00e-126	446.00
IUUC-Olo-080345	Oryza longistaminata	44.94	2.00e-126	446.00
IUUC-Ome-081833	Oryza meridionalis	45.12	1.00e-126	446.00
IUUC-Opu-083689	Oryza punctata	45.39	9.00e-126	443.00
IUUC-Oru-085238	Oryza rufipogon	45.49	2.00e-127	449.00
IUUC-Osa-085803	Oryza sativa	45.49	2.00e-127	449.00
IUUC-Pyt-104811	Pyrenophora triticirepentis	30.49	1.00e-56	214.00
IUUC-Sbi-114446	Sorghum bicolor	47.80	1.00e-132	466.00
IUUC-Tae-125183	Triticum aestivum	48.20	1.00e-131	462.00
IUUC-Tur-126854	Triticum urartu	48.29	5.00e-131	461.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence