iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Yli-134551

Ensembl Protein ID

CAG80997

UniProt Accession

Q6C953; IPI3_YARLI

Genbank Protein ID

CAG80997.1

Protein Name

Pre-rRNA-processing protein IPI3

Genbank Nucleotide ID

CR382130

Gene Name

IPI3; YALI0D13948g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
YALI0_D13948g	CAG80997	CAG80997

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.40e-13	47.4	270	302

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrt 32
           H++ vt+la+  d tllvs+ d g i vWDl +
   Q: 270  HKSAVTSLALsFDaTLLVSADDKGFICVWDLPS 302
           99******999889****************965 PP

Organism

Yarrowia lipolytica

Functional Description
(View)

Involved inthe processing of ITS2 sequences from 35S pre-rRNA.

Protein Sequence
(Fasta)

MEELIIYTTN KGACAVDLHS GNNITHFKND ETAPNLSVFL TNTPSGNPLL FSAQTKGAMM 60
HVYNWNRESV DQQIVLPEKL SCLAASTCGT WLAGGSASGR LFVWELASGK LVFSREVHYQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAAGAAC TCATCATCTA CACAACCAAC AAGGGTGCAT GTGCGGTGGA TCTGCATTCC 60
GGCAACAACA TTACGCACTT CAAAAACGAT GAGACGGCCC CCAATCTGTC CGTCTTTCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0006364--P:rRNA processing

KEGG

yli:YALI0D13948g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001040	Aegilops tauschii	26.59	7.00e-19	85.90
IUUC-Aml-001819	Ailuropoda melanoleuca	27.47	8.00e-17	79.30
IUUC-Atr-002688	Amborella trichopoda	31.97	7.00e-26	109.00
IUUC-Aly-006061	Arabidopsis lyrata	27.25	1.00e-29	122.00
IUUC-Ath-007111	Arabidopsis thaliana	27.39	3.00e-26	110.00
IUUC-Acl-008357	Aspergillus clavatus	27.91	9.00e-21	92.80
IUUC-Afl-008564	Aspergillus flavus	27.49	4.00e-22	97.40
IUUC-Afu-009113	Aspergillus fumigatus	28.44	1.00e-23	102.00
IUUC-Ani-009132	Aspergillus nidulans	26.45	2.00e-21	95.10
IUUC-Ang-009586	Aspergillus niger	25.57	8.00e-20	89.40
IUUC-Aor-009882	Aspergillus oryzae	27.41	8.00e-23	99.80
IUUC-Ate-010249	Aspergillus terreus	28.12	2.00e-23	101.00
IUUC-Ame-010912	Astyanax mexicanus	27.57	4.00e-24	103.00
IUUC-Bgr-012242	Blumeria graminis	24.11	6.00e-15	73.20
IUUC-Bta-013402	Bos taurus	29.46	7.00e-19	86.30
IUUC-Bci-013791	Botrytis cinerea	27.04	7.00e-17	79.70
IUUC-Bdi-015054	Brachypodium distachyon	30.11	6.00e-26	109.00
IUUC-Bol-016342	Brassica oleracea	32.20	2.00e-25	107.00
IUUC-Bra-016967	Brassica rapa	32.20	2.00e-25	107.00
IUUC-Cja-019758	Callithrix jacchus	29.46	3.00e-18	84.30
IUUC-Cfa-020495	Canis familiaris	28.13	2.00e-17	81.30
IUUC-Cpo-021438	Cavia porcellus	26.37	9.00e-20	89.00
IUUC-Csa-023416	Chlorocebus sabaeus	28.20	2.00e-18	84.70
IUUC-Csv-025918	Ciona savignyi	27.78	3.00e-23	100.00
IUUC-Cgl-026618	Colletotrichum gloeosporioides	25.36	5.00e-22	96.70
IUUC-Cne-026843	Cryptococcus neoformans	36.29	4.00e-31	127.00
IUUC-Cme-027256	Cyanidioschyzon merolae	24.43	9.00e-11	59.70
IUUC-Dre-027560	Danio rerio	27.41	2.00e-22	98.20
IUUC-Dno-029315	Dasypus novemcinctus	29.43	9.00e-25	105.00
IUUC-Dor-030935	Dipodomys ordii	25.00	4.00e-24	103.00
IUUC-Dse-031492	Dothistroma septosporum	30.92	3.00e-26	110.00
IUUC-Dme-032059	Drosophila melanogaster	28.01	2.00e-26	111.00
IUUC-Fca-036068	Felis catus	30.36	9.00e-14	69.30
IUUC-Fal-037467	Ficedula albicollis	25.39	3.00e-22	97.40
IUUC-Fox-037903	Fusarium oxysporum	33.33	1.00e-22	98.60
IUUC-Fso-038214	Fusarium solani	29.91	3.00e-14	70.90
IUUC-Gmo-039323	Gadus morhua	30.49	1.00e-15	75.50
IUUC-Ggr-040050	Gaeumannomyces graminis	35.29	5.00e-13	67.00
IUUC-Gga-040563	Gallus gallus	28.12	7.00e-16	76.30
IUUC-Gac-042641	Gasterosteus aculeatus	26.64	5.00e-21	93.20
IUUC-Gma-043856	Glycine max	27.11	9.00e-26	109.00
IUUC-Ggo-045137	Gorilla gorilla	29.17	3.00e-14	70.90
IUUC-Hsa-046335	Homo sapiens	27.54	3.00e-14	70.90
IUUC-Hvu-047685	Hordeum vulgare	28.24	1.00e-21	95.50
IUUC-Itr-048032	Ictidomys tridecemlineatus	26.75	1.00e-24	105.00
IUUC-Kpa-049129	Komagataella pastoris	35.42	1.00e-42	165.00
IUUC-Lch-049532	Latimeria chalumnae	26.20	3.00e-26	110.00
IUUC-Lpe-051321	Leersia perrieri	30.33	1.00e-22	99.00
IUUC-Loc-052471	Lepisosteus oculatus	26.12	1.00e-22	98.60
IUUC-Lma-053091	Leptosphaeria maculans	29.02	4.00e-24	103.00
IUUC-Laf-054331	Loxodonta africana	29.54	1.00e-18	85.50
IUUC-Mcc-055803	Macaca mulatta	28.20	2.00e-18	84.70
IUUC-Meu-056090	Macropus eugenii	29.02	1.00e-26	111.00
IUUC-Mor-057160	Magnaporthe oryzae	28.87	8.00e-21	92.80
IUUC-Mtr-057827	Medicago truncatula	25.57	3.00e-23	100.00
IUUC-Mla-058943	Melampsora laricipopulina	33.14	3.00e-20	91.30
IUUC-Mga-059282	Meleagris gallopavo	28.57	2.00e-18	84.70
IUUC-Mvi-060315	Microbotryum violaceum	33.14	8.00e-21	93.20
IUUC-Mmr-061127	Microcebus murinus	28.40	5.00e-18	83.60
IUUC-Mdo-062350	Monodelphis domestica	28.74	6.00e-26	109.00
IUUC-Mmu-063706	Mus musculus	29.02	4.00e-25	106.00
IUUC-Mac-065554	Musa acuminata	30.11	1.00e-21	95.90
IUUC-Mpu-066711	Mustela putorius furo	26.75	3.00e-24	103.00
IUUC-Mlu-068121	Myotis lucifugus	29.03	2.00e-16	78.20
IUUC-Nfi-068454	Neosartorya fischeri	28.28	9.00e-24	103.00
IUUC-Ncr-068914	Neurospora crassa	25.35	2.00e-18	84.70
IUUC-Nle-069518	Nomascus leucogenys	28.66	2.00e-16	78.20
IUUC-Ont-071435	Oreochromis niloticus	30.81	8.00e-27	112.00
IUUC-Oba-075873	Oryza barthii	30.18	8.00e-29	119.00
IUUC-Obr-076097	Oryza brachyantha	25.62	3.00e-20	91.30
IUUC-Ogl-077840	Oryza glaberrima	30.18	7.00e-29	119.00
IUUC-Ogu-077988	Oryza glumaepatula	30.18	8.00e-29	119.00
IUUC-Oin-079237	Oryza indica	30.47	2.00e-17	81.30
IUUC-Olo-080415	Oryza longistaminata	29.30	5.00e-25	107.00
IUUC-Ome-081952	Oryza meridionalis	30.95	1.00e-29	122.00
IUUC-Oni-082300	Oryza nivara	30.18	8.00e-29	119.00
IUUC-Opu-083436	Oryza punctata	28.38	7.00e-15	73.20
IUUC-Oru-085164	Oryza rufipogon	30.18	1.00e-29	121.00
IUUC-Osa-086129	Oryza sativa	29.88	7.00e-29	119.00
IUUC-Ola-086571	Oryzias latipes	29.79	2.00e-24	104.00
IUUC-Oga-088561	Otolemur garnettii	24.88	2.00e-20	91.70
IUUC-Oar-090131	Ovis aries	30.91	1.00e-14	72.40
IUUC-Ptr-091301	Pan troglodytes	24.04	2.00e-12	64.70
IUUC-Pan-092810	Papio anubis	28.20	1.00e-18	85.10
IUUC-Psi-093091	Pelodiscus sinensis	26.12	1.00e-15	75.50
IUUC-Pno-095047	Phaeosphaeria nodorum	28.04	3.00e-16	77.80
IUUC-Ppa-095317	Physcomitrella patens	32.65	1.00e-24	105.00
IUUC-Pfo-096996	Poecilia formosa	30.66	2.00e-23	101.00
IUUC-Pab-097747	Pongo abelii	27.54	5.00e-18	83.60
IUUC-Pop-099609	Populus trichocarpa	28.57	3.00e-27	114.00
IUUC-Pca-100972	Procavia capensis	28.48	8.00e-15	72.80
IUUC-Ppe-101904	Prunus persica	27.59	2.00e-26	111.00
IUUC-Pva-102700	Pteropus vampyrus	30.64	9.00e-10	55.80
IUUC-Pgr-103616	Puccinia graminis	27.42	2.00e-19	88.60
IUUC-Ptt-103954	Puccinia triticina	27.27	3.00e-17	81.60
IUUC-Pte-104120	Pyrenophora teres	27.41	7.00e-23	99.80
IUUC-Pyt-104558	Pyrenophora triticirepentis	26.25	2.00e-22	98.60
IUUC-Rno-104933	Rattus norvegicus	29.50	4.00e-25	107.00
IUUC-Sce-106403	Saccharomyces cerevisiae	26.43	3.00e-27	114.00
IUUC-Sha-107636	Sarcophilus harrisii	29.31	3.00e-27	114.00
IUUC-Sja-107783	Schizosaccharomyces japonicus	33.26	7.00e-52	196.00
IUUC-Spo-108192	Schizosaccharomyces pombe	31.52	2.00e-51	194.00
IUUC-Ssl-108384	Sclerotinia sclerotiorum	24.31	7.00e-16	76.30
IUUC-Smo-109498	Selaginella moellendorffii	29.43	2.00e-25	108.00
IUUC-Sit-110770	Setaria italica	30.82	5.00e-28	116.00
IUUC-Sly-111453	Solanum lycopersicum	28.34	4.00e-31	126.00
IUUC-Stu-112384	Solanum tuberosum	30.77	8.00e-30	123.00
IUUC-Sbi-113952	Sorghum bicolor	27.64	4.00e-26	110.00
IUUC-Sre-115223	Sporisorium reilianum	33.47	4.00e-25	107.00
IUUC-Ssc-115627	Sus scrofa	29.17	2.00e-18	84.70
IUUC-Tgu-117404	Taeniopygia guttata	29.66	2.00e-21	94.00
IUUC-Tru-117629	Takifugu rubripes	30.39	6.00e-22	96.30
IUUC-Tni-119839	Tetraodon nigroviridis	30.21	2.00e-17	81.30
IUUC-Tca-121766	Theobroma cacao	27.10	4.00e-26	110.00
IUUC-Tre-122047	Trichoderma reesei	29.30	2.00e-20	91.30
IUUC-Tvi-122668	Trichoderma virens	29.30	2.00e-21	95.10
IUUC-Tae-125742	Triticum aestivum	28.82	9.00e-22	95.90
IUUC-Tur-126673	Triticum urartu	26.84	3.00e-10	57.80
IUUC-Tme-127070	Tuber melanosporum	25.71	2.00e-22	98.60
IUUC-Ttr-128735	Tursiops truncatus	29.11	6.00e-14	70.10
IUUC-Uma-129521	Ustilago maydis	33.17	3.00e-25	107.00
IUUC-Vvi-130872	Vitis vinifera	31.37	3.00e-26	110.00
IUUC-Xtr-131838	Xenopus tropicalis	29.84	5.00e-26	109.00
IUUC-Xma-134106	Xiphophorus maculatus	30.09	5.00e-22	96.30
IUUC-Zma-134703	Zea mays	29.15	1.00e-26	112.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence