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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-007236
Ensembl Protein ID AT3G26640.1
UniProt Accession Q38960; Q84W53; LWD2_ARATH
Genbank Protein ID CAA66120.1; CAA66815.1; BAB01729.1; AEE77190.1; AAO42231.1; AAM63346.1; AAV85716.1
Protein Name WD repeat-containing protein LWD2; Protein ANTHOCYANIN 11-B; Protein LIGHT-REGULATED WD2; WD repeat-containing protein AN11-B
Genbank Nucleotide ID X97488; X98130; AB026648; CP002686; BT004214; AY086141; BT020361
Gene Name LWD2; AN11B; At3g26640; MLJ15.3; orf10
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G26640 AT3G26640.1 AT3G26640.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 7.30e-17 61.7 177 208
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclafsd.tllvsGsdDgtikvWDlrt 32
    H +v+++a+ + + ++s s Dg+++v+Dlr+
   Q: 177 HDKEVYDIAWGGvGVFASVSEDGSVRVFDLRD 208
    8899******55699**************987 PP
   

Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     Clock protein essential for the proper expression phase and period length of both the oscillator and output genes known to participate in photoperiod sensing. Required for the expression of APRR9, APRR7, and APRR5. Regulated by APRR9 and APRR7 at the transcriptional level, indicating the existence of a positive feedback loop within the circadian clock (PubMed:21357491).
Clock protein essential for the proper expression phase and period length of both the oscillator and output genes known to participate in photoperiod sensing. Required for the expression of APRR9, APRR7, and APRR5. Regulated by APRR9 and APRR7 at the transcriptional level, indicating the existence of a positive feedback loop within the circadian clock (PubMed:21357491).
Protein Sequence
(Fasta)
MVTSSDQIQN GSEEQSKRSE IYTYEAPWQI YAMNWSIRRD KKYRLAITSL IEQYPNRVEI 60
VQLDESNGEI RSDPNLCFEH PYPPTKTSFI PDKECQRPDL LATSSDFLRL WRISDDESRV 120
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Protein Fasta Sequence



>IUUC-Ath-007236|E3,WD_repeat|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
GTCGTTTTTG TTAGCTAAAA AGAAGAAATA GTAAATATCC ATTAGAAGAA GAAGACGAAG 60
CAGAGGAATC TAGGGTTTAT GCTACATTGA AGCAAAGATG GTTACGAGCA GCGATCAAAT 120
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Nucleotide Fasta Sequence



>IUUC-Ath-007236|E3,WD_repeat|Arabidopsis thaliana
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Sequence Source Ensembl
Keyword

KW-0007--Acetylation
KW-0090--Biological rhythms
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0716--Sensory transduction
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0043153--P:entrainment of circadian clock by photoperiod
GO:0048573--P:photoperiodism, flowering
GO:0048511--P:rhythmic process

KEGG ath:AT3G26640
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aly-005735 Arabidopsis lyrata 98.27 0.00e+00 702.00
IUUC-Eca-033668 Equus caballus 53.14 1.00e-100 358.00
Created Date 25-Jun-2017

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