iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Zma-135839

Ensembl Protein ID

Zm00001d019789_T002

UniProt Accession

A0A1D6I0C5; A0A1D6I0C5_MAIZE

Genbank Protein ID

ONM53725.1; ONM53727.1; ONM53731.1; ONM53732.1

Protein Name

Protein HIRA

Genbank Nucleotide ID

CM007650; CM007650; CM007650; CM007650

Gene Name

ZEAMMB73_Zm00001d019789

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d019789	Zm00001d019789_T002	Zm00001d019789_T002
Zm00001d019789	Zm00001d019789_T009	Zm00001d019789_T009
Zm00001d019789	Zm00001d019789_T004	Zm00001d019789_T004
Zm00001d019789	Zm00001d019789_T006	Zm00001d019789_T006

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.30e-23	81.7	123	160
UBD/Beta-Prp	1.10e-40	141.7	11	208

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gHt++v +l++ +d  +l+sGs D+t+++W+++ g ++
   Q: 123  GHTADVVDLNWsPDdSTLASGSLDNTVHIWNITNGMCT 160
           8***********77799****************99986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkl...........lrslsgheaevtavkfspdgkilvtgseDrtikvw....... 79
           h+  +i ++++ p++  +atg+ d+++++w++++ ++           l+++ +h + v++v++ ++g +l++gs+D++i +        
   Q: 11   HEGLQIFSIDIQPGGLRFATGGGDQKVRIWSMKSVDKnnnhndssqglLATMRDHFGSVNCVRWARHGRYLASGSDDQVILIHerkagsg 100
           56667888999***********************9999*********************************************8888888 PP
   S: 80   ..........dlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDr 159
                     d+++ k ++tl+gh+++v++l++sp++++l+sGs d+t+++w++ +g c   +l+gh+++v +v+++p g+ ++s s+D+
   Q: 101  tsefgsgeppDVENWKVIMTLRGHTADVVDLNWSPDDSTLASGSLDNTVHIWNITNGMCTA-VLRGHSSLVKGVTWDPIGSFIASQSDDK 189
           8888888888888***********************************************9.**************************** PP
   S: 160  tvrlWdlktgkllrtltggh 179
           tv +W+ +  +l ++ +g h
   Q: 190  TVIIWRTSDWSLAHKTEG-H 208
           ******988888887776.3 PP

Organism

Zea mays

Functional Description
(View)

Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle.

Protein Sequence
(Fasta)

MIAEKPNWIR HEGLQIFSID IQPGGLRFAT GGGDQKVRIW SMKSVDKNNN HNDSSQGLLA 60
TMRDHFGSVN CVRWARHGRY LASGSDDQVI LIHERKAGSG TSEFGSGEPP DVENWKVIMT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AATTTTCATT CGAATTCGTT TTCGTTTTTC GTTCTTTTTT GTTTTTCCCC ATTCTCACAC 60
GAACAAGACG AACACGTTCG TCCCCATCGC CGTGTTCTTC GCGCCGCCGC TGCCCACCGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0853--WD repeat

Interpro

IPR031120--HIR1
IPR011494--Hira
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF07569--Hira
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0016569--P:covalent chromatin modification
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001039	Aegilops tauschii	79.37	0.00e+00	1619.00
IUUC-Aml-001723	Ailuropoda melanoleuca	42.19	1.00e-82	300.00
IUUC-Atr-003132	Amborella trichopoda	67.89	0.00e+00	1332.00
IUUC-Apl-003197	Anas platyrhynchos	37.15	2.00e-83	303.00
IUUC-Aca-004733	Anolis carolinensis	37.43	2.00e-86	313.00
IUUC-Aly-005446	Arabidopsis lyrata	65.32	0.00e+00	1233.00
IUUC-Ath-007627	Arabidopsis thaliana	63.29	0.00e+00	1224.00
IUUC-Ago-007766	Ashbya gossypii	30.16	5.00e-62	232.00
IUUC-Acl-008104	Aspergillus clavatus	31.82	3.00e-70	259.00
IUUC-Bta-013320	Bos taurus	42.19	2.00e-82	300.00
IUUC-Bci-013795	Botrytis cinerea	31.11	1.00e-70	261.00
IUUC-Bdi-014075	Brachypodium distachyon	83.54	0.00e+00	1672.00
IUUC-Bol-016440	Brassica oleracea	65.97	0.00e+00	1229.00
IUUC-Bra-016651	Brassica rapa	65.34	0.00e+00	1200.00
IUUC-Cel-018692	Caenorhabditis elegans	28.13	3.00e-44	173.00
IUUC-Cja-018987	Callithrix jacchus	35.67	6.00e-75	275.00
IUUC-Cfa-020132	Canis familiaris	41.75	1.00e-82	300.00
IUUC-Cpo-021484	Cavia porcellus	42.35	2.00e-86	313.00
IUUC-Cre-022846	Chlamydomonas reinhardtii	35.81	6.00e-72	265.00
IUUC-Csa-023081	Chlorocebus sabaeus	37.52	3.00e-87	316.00
IUUC-Cin-025182	Ciona intestinalis	36.94	2.00e-84	306.00
IUUC-Csv-026154	Ciona savignyi	37.82	7.00e-85	308.00
IUUC-Cne-026891	Cryptococcus neoformans	43.22	4.00e-81	295.00
IUUC-Cme-027349	Cyanidioschyzon merolae	30.36	5.00e-53	202.00
IUUC-Dno-029557	Dasypus novemcinctus	37.07	8.00e-71	261.00
IUUC-Dor-030687	Dipodomys ordii	35.71	2.00e-65	243.00
IUUC-Dse-031334	Dothistroma septosporum	26.53	6.00e-89	322.00
IUUC-Ete-032384	Echinops telfairi	36.75	4.00e-61	229.00
IUUC-Eca-033430	Equus caballus	36.92	1.00e-82	301.00
IUUC-Fca-036121	Felis catus	42.05	8.00e-84	305.00
IUUC-Fal-036817	Ficedula albicollis	42.19	6.00e-83	301.00
IUUC-Fso-038409	Fusarium solani	26.72	5.00e-89	322.00
IUUC-Ggr-040016	Gaeumannomyces graminis	34.65	5.00e-69	256.00
IUUC-Gga-040936	Gallus gallus	37.87	1.00e-87	317.00
IUUC-Gma-044252	Glycine max	69.57	0.00e+00	1394.00
IUUC-Ggo-045430	Gorilla gorilla	37.52	3.00e-87	316.00
IUUC-Hsa-046442	Homo sapiens	37.52	3.00e-87	316.00
IUUC-Hvu-047587	Hordeum vulgare	83.03	0.00e+00	1566.00
IUUC-Itr-048910	Ictidomys tridecemlineatus	42.72	2.00e-64	238.00
IUUC-Lch-050474	Latimeria chalumnae	41.22	4.00e-81	296.00
IUUC-Lpe-051209	Leersia perrieri	82.44	0.00e+00	1627.00
IUUC-Lma-053237	Leptosphaeria maculans	33.73	2.00e-67	250.00
IUUC-Laf-053718	Loxodonta africana	37.13	7.00e-87	315.00
IUUC-Mcc-055621	Macaca mulatta	34.93	6.00e-74	271.00
IUUC-Meu-055914	Macropus eugenii	38.27	4.00e-56	213.00
IUUC-Mpo-057364	Magnaporthe poae	31.77	2.00e-69	257.00
IUUC-Mtr-057744	Medicago truncatula	71.72	0.00e+00	1381.00
IUUC-Mla-058914	Melampsora laricipopulina	26.64	4.00e-80	292.00
IUUC-Mga-060181	Meleagris gallopavo	37.93	1.00e-83	304.00
IUUC-Mmr-060871	Microcebus murinus	37.72	5.00e-88	318.00
IUUC-Mdo-062301	Monodelphis domestica	37.52	2.00e-86	313.00
IUUC-Mmu-063888	Mus musculus	37.33	5.00e-87	315.00
IUUC-Mac-064768	Musa acuminata	71.00	0.00e+00	1370.00
IUUC-Mpu-066732	Mustela putorius furo	42.19	1.00e-82	301.00
IUUC-Mlu-067542	Myotis lucifugus	37.00	9.00e-84	304.00
IUUC-Nfi-068396	Neosartorya fischeri	31.88	2.00e-64	240.00
IUUC-Nle-070156	Nomascus leucogenys	37.52	4.00e-87	316.00
IUUC-Opr-070808	Ochotona princeps	41.44	2.00e-54	206.00
IUUC-Ont-072105	Oreochromis niloticus	36.58	1.00e-81	297.00
IUUC-Ocu-074962	Oryctolagus cuniculus	37.12	9.00e-83	301.00
IUUC-Oba-075178	Oryza barthii	83.47	0.00e+00	1590.00
IUUC-Obr-076399	Oryza brachyantha	82.85	0.00e+00	1612.00
IUUC-Ogu-078797	Oryza glumaepatula	83.47	0.00e+00	1590.00
IUUC-Oin-080085	Oryza indica	82.95	0.00e+00	1505.00
IUUC-Olo-081048	Oryza longistaminata	80.72	0.00e+00	685.00
IUUC-Ome-081324	Oryza meridionalis	84.10	0.00e+00	1591.00
IUUC-Oni-082548	Oryza nivara	82.95	0.00e+00	1587.00
IUUC-Opu-084008	Oryza punctata	86.07	0.00e+00	832.00
IUUC-Oru-084339	Oryza rufipogon	83.47	0.00e+00	1591.00
IUUC-Osa-085782	Oryza sativa	83.47	0.00e+00	1591.00
IUUC-Olu-087611	Ostreococcus lucimarinus	41.03	2.00e-113	403.00
IUUC-Oga-087935	Otolemur garnettii	36.84	2.00e-83	303.00
IUUC-Oar-089229	Ovis aries	36.48	4.00e-65	243.00
IUUC-Ptr-090715	Pan troglodytes	37.52	3.00e-87	316.00
IUUC-Pan-092318	Papio anubis	37.10	2.00e-83	303.00
IUUC-Psi-094053	Pelodiscus sinensis	37.67	7.00e-85	308.00
IUUC-Pno-094985	Phaeosphaeria nodorum	31.47	1.00e-59	224.00
IUUC-Ppa-095819	Physcomitrella patens	48.92	0.00e+00	908.00
IUUC-Pab-098047	Pongo abelii	37.52	3.00e-87	316.00
IUUC-Pop-099587	Populus trichocarpa	70.30	0.00e+00	1362.00
IUUC-Pca-100558	Procavia capensis	49.74	5.00e-49	189.00
IUUC-Ppe-101261	Prunus persica	70.04	0.00e+00	1368.00
IUUC-Pva-102683	Pteropus vampyrus	37.13	2.00e-84	306.00
IUUC-Pgr-103660	Puccinia graminis	36.22	1.00e-60	227.00
IUUC-Ptt-103900	Puccinia triticina	37.30	3.00e-60	226.00
IUUC-Pte-104209	Pyrenophora teres	33.88	2.00e-71	264.00
IUUC-Pyt-104802	Pyrenophora triticirepentis	33.88	1.00e-70	261.00
IUUC-Rno-105566	Rattus norvegicus	37.33	8.00e-87	315.00
IUUC-Sha-107514	Sarcophilus harrisii	34.26	1.00e-70	261.00
IUUC-Smo-109186	Selaginella moellendorffii	51.04	0.00e+00	914.00
IUUC-Sit-109980	Setaria italica	86.46	0.00e+00	1758.00
IUUC-Sly-111547	Solanum lycopersicum	69.48	0.00e+00	1323.00
IUUC-Stu-112705	Solanum tuberosum	69.28	0.00e+00	1314.00
IUUC-Sar-113222	Sorex araneus	35.85	5.00e-75	275.00
IUUC-Sbi-114528	Sorghum bicolor	92.47	0.00e+00	1805.00
IUUC-Sre-115061	Sporisorium reilianum	32.87	3.00e-69	256.00
IUUC-Ssc-116364	Sus scrofa	36.71	1.00e-82	301.00
IUUC-Tgu-116645	Taeniopygia guttata	42.19	6.00e-83	301.00
IUUC-Tsy-119212	Tarsius syrichta	42.56	4.00e-71	262.00
IUUC-Tca-121765	Theobroma cacao	70.84	0.00e+00	1375.00
IUUC-Tre-121887	Trichoderma reesei	34.43	4.00e-62	233.00
IUUC-Tvi-122262	Trichoderma virens	34.20	7.00e-62	231.00
IUUC-Tae-123009	Triticum aestivum	80.56	0.00e+00	1080.00
IUUC-Tur-126483	Triticum urartu	82.34	0.00e+00	1640.00
IUUC-Tbe-127350	Tupaia belangeri	37.85	1.00e-48	187.00
IUUC-Ttr-129077	Tursiops truncatus	33.47	4.00e-72	266.00
IUUC-Uma-129465	Ustilago maydis	32.88	5.00e-72	265.00
IUUC-Vvi-131397	Vitis vinifera	71.31	0.00e+00	1395.00
IUUC-Xtr-132057	Xenopus tropicalis	37.99	1.00e-87	318.00
IUUC-Yli-134424	Yarrowia lipolytica	35.55	4.00e-66	246.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence