iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.2__2230__AT1G79350.1	fgenesh2_kg.2__2230__AT1G79350.1	fgenesh2_kg.2__2230__AT1G79350.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	2.50e-08	34.7	704	752

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C +C  ++e + +l+ C++C++ fHp+C+ ++   +lp++  wiC +C++
   Q: 704  QICQICSGEDERK-KLLHCSECDKLFHPDCVVPP-VIDLPSEA-WICYSCKE 752
           79****9888865.7*******************.88999996.******97 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MTQSPVQPPP PLPAPPHSAG GGVIRGDVQV RCAGCRVILR VKTGVVEFSC PTCQLPQMLP 60
PELLSRARPQ FPQSQQQPPP PQPQPIQTLP PPIQQQLKPL NLPRPPVPAH GIDPTKMQLP 120

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Nucleotide Sequence
(Fasta)

AAAAAGGGAA GAAAATCTGA AACCAAAAAA AACGAGAAGG GAAGGCAAAA AAGGAGTCGA 60
AGAACCTTTC GCGCTCTGAC GAAATTCATT ACTTACACTG ATTTATACTT TTGTCTTCCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR027417--P-loop_NTPase
IPR026937--SBNO_Helicase_C_dom
IPR026741--SNO
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF13871--Helicase_C_4
PF00628--PHD

SMART

SM00249--PHD

Gene Ontology

GO:0005634--C:nucleus
GO:1990841--F:promoter-specific chromatin binding
GO:0008270--F:zinc ion binding
GO:0006334--P:nucleosome assembly
GO:1900036--P:positive regulation of cellular response to heat
GO:0040029--P:regulation of gene expression, epigenetic
GO:0006355--P:regulation of transcription, DNA-templated
GO:0009408--P:response to heat

KEGG

aly:ARALYDRAFT_477100

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bol-015830	Brassica oleracea	89.79	0.00e+00	2221.00
IUUC-Bra-017824	Brassica rapa	88.84	0.00e+00	2206.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence