iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099799

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000349

Gene Name

POPTRDRAFT_837239; POPTR_0013s13580g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0013s13580	POPTR_0013s13580.1	POPTR_0013s13580.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	6.40e-06	27.2	44	108
E3 activity/RING/RING	3.90e-08	34.8	47	97

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwl........asggk......tcPvtrqplteedlvPn 58
            f C I l+  +dPvv+ +G+ y   +I kwl        +   +      +cPv++++++++++vP 
   Q: 44   GFDCNICLDSVHDPVVTLCGHLYCWPCIYKWLhfqsisaeN---QdqhpqqQCPVCKAEVSQSTIVPL 108
           599*****************************877665431...1567899*************9994 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkw......pglknssskefrCPlCr 46
           C iCl++  d p+v+ CgH+++  C++kw         ++ + ++++CP+C+
   Q: 47   CNICLDSVHD-PVVTLCGHLYCWPCIYKWlhfqsiSAENQDQHPQQQCPVCK 97
           99********.9999**************999999777777899999****7 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MALDQYMEET MAQNDYNRED KPSLPNWKSV SETVIDSDDS RSSGFDCNIC LDSVHDPVVT 60
LCGHLYCWPC IYKWLHFQSI SAENQDQHPQ QQCPVCKAEV SQSTIVPLFG RGQTTKPCKG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATATATATCT CTCTCCTCGG CTACGTCTCT CTCAATTCTC TCCTCACTAT CTTCATCTCT 60
TCTTCTCTCA TTCACGGCCA TTGCTCTGTA CCTTCCTGAT ACCCTTTGAA ACTCATTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:0016021--C:integral component of membrane
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0044390--F:ubiquitin-like protein conjugating enzyme binding
GO:0008270--F:zinc ion binding
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0013s13580g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006069	Arabidopsis lyrata	46.57	4.00e-45	173.00
IUUC-Ath-006807	Arabidopsis thaliana	46.08	1.00e-45	175.00
IUUC-Gma-044004	Glycine max	54.44	4.00e-73	267.00
IUUC-Mtr-058147	Medicago truncatula	54.18	6.00e-70	256.00
IUUC-Ppe-101414	Prunus persica	61.35	8.00e-85	306.00
IUUC-Pte-104163	Pyrenophora teres	34.52	1.00e-08	53.10
IUUC-Sly-111236	Solanum lycopersicum	51.81	7.00e-62	229.00
IUUC-Stu-112674	Solanum tuberosum	51.00	7.00e-59	219.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence