iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006759

UUCD1 version

UUC-ArT-01084

Ensembl Protein ID

AT4G12140.1

UniProt Accession

Q9SZ79; Q9SZ79_ARATH

Genbank Protein ID

AEE83100.1; CAB40955.1; CAB78257.1

Protein Name

Putative uncharacterized protein AT4g12140; Putative uncharacterized protein F16J13.210; RING/U-box superfamily protein

Genbank Nucleotide ID

CP002687; AL049638; AL161533

Gene Name

F16J13.210; At4g12140; T4C9.1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G12140	AT4G12140.1	AT4G12140.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	2.70e-08	35.1	153	196

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf....kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl+++    k+gp  ++C Hvfh +Cl  w       +++ +CP Cr
   Q: 153  CSICLQSLvsssKTGPTRMSCSHVFHSSCLVEW------LKRKNTCPMCR 196
           ******999999888999***************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MNDPIPKPIV SVQVQAVKVS TNSIFLIVNT IKDEILINPV TGHRAETSTP LSYKSLPINF 60
SLPSCSHHHI QSLLHDQLHS DDNWLCDHLV PKISTAAINA GFMNNGVELT VGVTVTYQYV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAATGATC CCATTCCCAA ACCCATAGTG AGCGTTCAGG TCCAAGCTGT GAAAGTCTCT 60
ACAAACTCGA TCTTCCTCAT CGTCAATACC ATTAAGGATG AGATCCTTAT AAACCCTGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR011016--Znf_RING-CH
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING
SM00744--RINGv

Gene Ontology

GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

ath:AT4G12140

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006443	Arabidopsis lyrata	78.33	2.00e-86	310.00
IUUC-Ome-081907	Oryza meridionalis	46.81	6.00e-10	57.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence