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Tag Content
iUUCD ID IUUC-Bra-017876
Ensembl Protein ID Bra008691.1-P
UniProt Accession M4CWU4; M4CWU4_BRARP
Protein Name Ribosome biogenesis protein WDR12 homolog
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bra008691 Bra008691.1 Bra008691.1-P
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 7.50e-32 109.0 352 386
UBD/Beta-Prp 3.40e-41 142.4 105 299
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
    H+++++++++ s+ +lvs+s+Dg+i++WDlrt
   Q: 352 HASWISACKWhkSSwFHLVSASYDGKIMLWDLRTA 386
    9**********977688***************986 PP
   


   UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk....ilvtgseDrtikvwdls.........tgkcvhtlk 91
    h++ +++v+ ++++++tg++dg ++w+ + ++ + l+gh+++++++ f +++ +++t+++Drt++++ ++ +l+
   Q: 105 HDDWVSAVDG-SSSRFILTGCYDGLGRIWSSPE-SCTHILEGHSGAISSIAFVSSEGaenvTIATAAKDRTLRLFKVDtaesgdpttRVGAYKILR 198
    5666666666.67899*************9877.999***************999888999**************666666666555555677889 PP
   S: 92 ghedsvlslsfspsgdklvsGshdrtirvwdletgqclee.......................tlsghdgvvncvvvhpdgnllvsGslDrtvrlW 164
    gh++sv s++ +++g+k+ sGs+d ti++wd+++ + + t+ gh++ v++vv+++ +++ s+s D +r W
   Q: 199 GHKASVASVAAQKYGSKICSGSWDCTINLWDTDEATSELSvagkrrkgnnqaeetqlegeaetTFVGHTQCVSSVVWPE-HDVIYSCSWDHSIRRW 293
    **********************************9999999************************************99.8999************ PP
   S: 165 dlktgk 170
    d++tgk
   Q: 294 DVPTGK 299
    **9986 PP
   

Organism Brassica rapa
Functional Description
(View)

Functional Description



     Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Protein Sequence
(Fasta)
MDGGGEDASK VIHVKFVTKL DSPFQAPSSS VVIPSNVTRL GLSSIVNSLL TLEKHEAFDF 60
LIDGELIRMS LEQFLLAKGI SAERTLEIEY IRAVAPRKEE KPSLHDDWVS AVDGSSSRFI 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Bra-017876|E3,WD_repeat;UBD,Beta-Prp|Brassica rapa
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGGACGGCG GAGGAGAAGA CGCGTCGAAA GTAATCCACG TGAAGTTCGT CACGAAGCTT 60
GACTCTCCGT TCCAAGCTCC GTCCAGCTCC GTCGTTATCC CTTCCAATGT CACTCGTCTC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Bra-017876|E3,WD_repeat;UBD,Beta-Prp|Brassica rapa
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001997 Ailuropoda melanoleuca 33.74 2.00e-53 202.00
IUUC-Aca-004370 Anolis carolinensis 33.99 1.00e-60 226.00
IUUC-Bta-012829 Bos taurus 33.25 4.00e-54 205.00
IUUC-Bol-015618 Brassica oleracea 98.36 0.00e+00 831.00
IUUC-Cfa-020471 Canis familiaris 33.25 3.00e-51 195.00
IUUC-Cpo-022260 Cavia porcellus 34.89 3.00e-53 202.00
IUUC-Csa-023989 Chlorocebus sabaeus 33.99 3.00e-52 199.00
IUUC-Dre-027907 Danio rerio 35.06 1.00e-63 236.00
IUUC-Dse-031308 Dothistroma septosporum 31.87 6.00e-49 187.00
IUUC-Eca-034285 Equus caballus 33.50 3.00e-53 202.00
IUUC-Eeu-035322 Erinaceus europaeus 31.20 2.00e-45 176.00
IUUC-Fca-036114 Felis catus 33.74 8.00e-54 204.00
IUUC-Fso-038244 Fusarium solani 26.45 3.00e-33 135.00
IUUC-Ggr-040093 Gaeumannomyces graminis 26.36 2.00e-26 113.00
IUUC-Gga-040610 Gallus gallus 35.29 5.00e-57 214.00
IUUC-Ggo-045179 Gorilla gorilla 33.99 4.00e-53 201.00
IUUC-Hsa-046114 Homo sapiens 33.99 2.00e-52 199.00
IUUC-Itr-048275 Ictidomys tridecemlineatus 33.74 3.00e-54 205.00
IUUC-Loc-052868 Lepisosteus oculatus 35.40 3.00e-61 228.00
IUUC-Mor-057114 Magnaporthe oryzae 27.71 3.00e-37 149.00
IUUC-Mla-059107 Melampsora laricipopulina 26.84 5.00e-38 151.00
IUUC-Mga-059745 Meleagris gallopavo 34.88 2.00e-56 212.00
IUUC-Mvi-060362 Microbotryum violaceum 24.39 4.00e-28 119.00
IUUC-Mmu-063546 Mus musculus 33.74 3.00e-54 205.00
IUUC-Mpu-066284 Mustela putorius furo 33.74 5.00e-54 204.00
IUUC-Mlu-067241 Myotis lucifugus 34.24 4.00e-54 204.00
IUUC-Ncr-068719 Neurospora crassa 28.67 4.00e-33 135.00
IUUC-Nle-068981 Nomascus leucogenys 34.24 5.00e-52 197.00
IUUC-Opr-071218 Ochotona princeps 32.65 1.00e-49 190.00
IUUC-Oan-073453 Ornithorhynchus anatinus 34.40 4.00e-63 234.00
IUUC-Ocu-074008 Oryctolagus cuniculus 33.74 2.00e-54 206.00
IUUC-Oga-088264 Otolemur garnettii 33.25 3.00e-52 199.00
IUUC-Oar-089335 Ovis aries 33.50 1.00e-54 206.00
IUUC-Ptr-091320 Pan troglodytes 33.99 2.00e-52 199.00
IUUC-Psi-093504 Pelodiscus sinensis 34.15 2.00e-56 213.00
IUUC-Pno-094929 Phaeosphaeria nodorum 29.55 7.00e-43 167.00
IUUC-Pva-102921 Pteropus vampyrus 33.64 2.00e-23 102.00
IUUC-Pgr-103637 Puccinia graminis 25.53 2.00e-34 139.00
IUUC-Pte-104135 Pyrenophora teres 30.39 3.00e-42 167.00
IUUC-Sce-106401 Saccharomyces cerevisiae 30.06 7.00e-50 191.00
IUUC-Sar-113596 Sorex araneus 30.54 4.00e-42 165.00
IUUC-Tbe-127736 Tupaia belangeri 27.78 8.00e-27 114.00
IUUC-Ttr-129041 Tursiops truncatus 28.82 6.00e-37 147.00
Created Date 25-Jun-2017

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