iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sit-110239

Ensembl Protein ID

Si005813m

UniProt Accession

K3XV56; K3XV56_SETIT

Genbank Protein ID

KQL09249.1

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

CM003531

Gene Name

LOC101760125; SETIT_005813mg

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Si005813m.g	Si005813m	Si005813m

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.10e-34	115.0	183	224
UBD/Beta-Prp	7.40e-67	226.6	10	296

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+c+++    d ++l++GsdD t kvWD+ t  ++++
   Q: 183  GHQKGVNCVDYftgGDrPYLITGSDDSTAKVWDYQTKSCVQT 224
           8********966*9778*******************999986 PP

UBD/Beta-Prp

   S: 5    lkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp 104
            ++++++++++v+ +p +++++++ ++g++ +wd++ + +++s++  e +v++ kf +++++ v g++D++i+v++++t + v ++++h+d++++++++p
   Q: 10   KFAQRSERVKSVDLHPTEPWILSSLYSGSVCIWDYQAQAMVKSFEVSELPVRSAKFVSRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP 109
           567788999******************************************************************************************* PP
   S: 105  sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgsld 201
           +  +++s s+d  i++wd+++g+   ++++gh++ v+ v+++p++ n ++s+slDrt ++W+l + +   tl g h++ v++++     ++++l++gs+d
   Q: 110  TLPYVLSSSDDMLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTTKIWSLGSPDPNFTLDG-HQKGVNCVDyfTGGDRPYLITGSDD 208
           ***********************9999**********************************************9.*********7445566********* PP
   S: 202  gtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvn 290
           +t k+wd+qt++cv+tl+ght n++ v f+p+  ++++gs+Dg++riW +++  l +tl++  ++v++v +++   + +v g ++++++
   Q: 209  STAKVWDYQTKSCVQTLEGHTHNISAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKG-SRRMVIGYDEGTIM 296
           *********************************************************************99444.45555555556655 PP

Organism

Setaria italica

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MPLRLEIKRK FAQRSERVKS VDLHPTEPWI LSSLYSGSVC IWDYQAQAMV KSFEVSELPV 60
RSAKFVSRKQ WVVAGADDMF IRVYNYNTMD KVKVFEAHTD YIRCVAVHPT LPYVLSSSDD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTACGCG GATCTGACCC CGCCCGCTCC CGATTCTCCA ATCCATTCGC CGGTTTTCCT 60
CGAGCCCAGC TCGCGACGTA TGCGCAGAGA TCTGACCAAT GTTGTTTCCT GCCTGTGTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

KEGG

sita:101760125

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	82.84	0.00e+00	1538.00
IUUC-Atr-003090	Amborella trichopoda	78.20	0.00e+00	1467.00
IUUC-Aly-006508	Arabidopsis lyrata	79.83	0.00e+00	1527.00
IUUC-Ath-007630	Arabidopsis thaliana	85.02	0.00e+00	1521.00
IUUC-Acl-008237	Aspergillus clavatus	52.33	0.00e+00	904.00
IUUC-Afu-008845	Aspergillus fumigatus	51.38	0.00e+00	892.00
IUUC-Ani-009135	Aspergillus nidulans	52.80	0.00e+00	884.00
IUUC-Aor-009939	Aspergillus oryzae	50.57	0.00e+00	915.00
IUUC-Ate-010355	Aspergillus terreus	52.56	0.00e+00	879.00
IUUC-Bgr-012249	Blumeria graminis	53.13	0.00e+00	886.00
IUUC-Bci-013866	Botrytis cinerea	53.38	0.00e+00	891.00
IUUC-Bdi-014102	Brachypodium distachyon	93.74	0.00e+00	1652.00
IUUC-Bol-016271	Brassica oleracea	78.81	0.00e+00	1513.00
IUUC-Bra-016617	Brassica rapa	83.98	0.00e+00	1468.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	66.07	0.00e+00	1118.00
IUUC-Csv-026012	Ciona savignyi	58.45	0.00e+00	973.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	48.95	0.00e+00	799.00
IUUC-Cne-026986	Cryptococcus neoformans	48.80	0.00e+00	857.00
IUUC-Cme-027219	Cyanidioschyzon merolae	50.18	0.00e+00	886.00
IUUC-Dre-027846	Danio rerio	61.55	0.00e+00	1108.00
IUUC-Dse-031268	Dothistroma septosporum	51.64	0.00e+00	881.00
IUUC-Dme-031791	Drosophila melanogaster	57.53	0.00e+00	1019.00
IUUC-Fca-036265	Felis catus	59.86	0.00e+00	1111.00
IUUC-Fox-037711	Fusarium oxysporum	52.95	0.00e+00	849.00
IUUC-Fso-038268	Fusarium solani	52.19	0.00e+00	851.00
IUUC-Ggr-039863	Gaeumannomyces graminis	52.38	0.00e+00	873.00
IUUC-Gma-042910	Glycine max	84.42	0.00e+00	1598.00
IUUC-Kpa-049265	Komagataella pastoris	51.38	0.00e+00	852.00
IUUC-Lch-050473	Latimeria chalumnae	58.22	0.00e+00	1108.00
IUUC-Loc-052675	Lepisosteus oculatus	61.55	0.00e+00	1109.00
IUUC-Lma-053218	Leptosphaeria maculans	52.75	0.00e+00	867.00
IUUC-Mor-057264	Magnaporthe oryzae	52.08	0.00e+00	857.00
IUUC-Mpo-057538	Magnaporthe poae	52.01	0.00e+00	876.00
IUUC-Mtr-058618	Medicago truncatula	82.61	0.00e+00	1548.00
IUUC-Mvi-060240	Microbotryum violaceum	47.87	0.00e+00	889.00
IUUC-Mac-064636	Musa acuminata	84.18	0.00e+00	1576.00
IUUC-Mlu-067059	Myotis lucifugus	58.61	0.00e+00	1092.00
IUUC-Nfi-068277	Neosartorya fischeri	51.03	0.00e+00	882.00
IUUC-Ncr-068659	Neurospora crassa	52.82	0.00e+00	890.00
IUUC-Oba-075760	Oryza barthii	92.53	0.00e+00	1687.00
IUUC-Ogl-077450	Oryza glaberrima	93.52	0.00e+00	1715.00
IUUC-Ogu-078994	Oryza glumaepatula	92.53	0.00e+00	1687.00
IUUC-Oin-079211	Oryza indica	93.72	0.00e+00	1649.00
IUUC-Olo-080731	Oryza longistaminata	91.47	0.00e+00	1667.00
IUUC-Ome-081762	Oryza meridionalis	87.84	0.00e+00	1560.00
IUUC-Oni-082324	Oryza nivara	92.53	0.00e+00	1686.00
IUUC-Opu-083433	Oryza punctata	96.17	0.00e+00	1611.00
IUUC-Oru-084829	Oryza rufipogon	92.65	0.00e+00	1690.00
IUUC-Osa-086026	Oryza sativa	96.04	0.00e+00	1709.00
IUUC-Ola-087245	Oryzias latipes	60.43	0.00e+00	1098.00
IUUC-Olu-087655	Ostreococcus lucimarinus	66.09	0.00e+00	1144.00
IUUC-Pma-094695	Petromyzon marinus	55.46	0.00e+00	976.00
IUUC-Pno-094785	Phaeosphaeria nodorum	59.45	2.00e-104	372.00
IUUC-Ppa-095911	Physcomitrella patens	76.48	0.00e+00	1415.00
IUUC-Pfo-096587	Poecilia formosa	60.60	0.00e+00	1102.00
IUUC-Pop-099634	Populus trichocarpa	84.85	0.00e+00	1557.00
IUUC-Ppe-101470	Prunus persica	82.56	0.00e+00	1596.00
IUUC-Pgr-103453	Puccinia graminis	52.69	0.00e+00	899.00
IUUC-Ptt-103868	Puccinia triticina	52.88	0.00e+00	899.00
IUUC-Pte-104274	Pyrenophora teres	53.30	0.00e+00	899.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	52.61	0.00e+00	848.00
IUUC-Rno-105979	Rattus norvegicus	53.04	0.00e+00	808.00
IUUC-Sce-106269	Saccharomyces cerevisiae	47.04	0.00e+00	750.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	45.76	0.00e+00	763.00
IUUC-Spo-108299	Schizosaccharomyces pombe	46.08	0.00e+00	795.00
IUUC-Smo-108695	Selaginella moellendorffii	80.76	0.00e+00	1404.00
IUUC-Sly-111525	Solanum lycopersicum	80.93	0.00e+00	1535.00
IUUC-Sre-115040	Sporisorium reilianum	51.33	0.00e+00	876.00
IUUC-Tca-121613	Theobroma cacao	85.23	0.00e+00	1623.00
IUUC-Tre-122072	Trichoderma reesei	52.34	0.00e+00	878.00
IUUC-Tvi-122546	Trichoderma virens	51.97	0.00e+00	862.00
IUUC-Tae-125292	Triticum aestivum	92.53	0.00e+00	1727.00
IUUC-Tur-126283	Triticum urartu	83.73	0.00e+00	1539.00
IUUC-Tme-127041	Tuber melanosporum	53.44	0.00e+00	906.00
IUUC-Uma-129351	Ustilago maydis	50.61	0.00e+00	877.00
IUUC-Vpa-130037	Vicugna pacos	50.76	2.00e-129	456.00
IUUC-Vvi-131689	Vitis vinifera	86.67	0.00e+00	1563.00
IUUC-Xma-133347	Xiphophorus maculatus	59.12	0.00e+00	1105.00
IUUC-Yli-134455	Yarrowia lipolytica	49.94	0.00e+00	798.00
IUUC-Zma-135789	Zea mays	93.08	0.00e+00	1746.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence