iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007216

Ensembl Protein ID

AT2G18900.1

UniProt Accession

F4IRI1; F4IRI1_ARATH

Genbank Protein ID

AEC06823.1

Protein Name

Transducin/WD40 repeat-like superfamily protein

Genbank Nucleotide ID

CP002685

Gene Name

At2g18900; F19F24.10; F19F24_10

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G18900	AT2G18900.1	AT2G18900.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.20e-16	59.3	282	317

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           H+++v+ l+f sd  +l sG++ g++ vW l+tg++
   Q: 282  HSAEVNVLNFsSDgAYLYSGGREGVLVVWQLDTGKK 317
           999********999******************9986 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MKRGGRSYVT SPPSFSNDAK KLLVCTGNTV SVFSAATGLQ ITSLEGHTAP VTTLIVVPAS 60
SPAQKILCYC WTASLDGTIR HWDFSGPELL KTIDAQLPIY SMVIPSLLSE PQQIDKRREL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAAAAAAAAA CAAAAGAGAC GAAGAAGGGT TTAAGTTAGG GCTTTTGAAG TAAACCAATT 60
TTGTGCGTCT CCCTTTTCTT CTTCTCTTCC CAATTTCACC GCCTCTCTCT ATCGCCGGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

KEGG

ath:AT2G18900

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001159	Aegilops tauschii	42.48	1.00e-171	596.00
IUUC-Atr-003057	Amborella trichopoda	50.30	0.00e+00	779.00
IUUC-Aca-004528	Anolis carolinensis	25.81	5.00e-50	192.00
IUUC-Aly-005971	Arabidopsis lyrata	96.64	0.00e+00	1608.00
IUUC-Afu-009094	Aspergillus fumigatus	29.45	3.00e-20	93.20
IUUC-Ani-009273	Aspergillus nidulans	26.13	1.00e-16	81.30
IUUC-Ate-010477	Aspergillus terreus	23.50	1.00e-16	81.30
IUUC-Ame-011596	Astyanax mexicanus	25.54	2.00e-49	189.00
IUUC-Bta-013087	Bos taurus	23.83	1.00e-42	167.00
IUUC-Bdi-014281	Brachypodium distachyon	48.47	0.00e+00	749.00
IUUC-Bol-015950	Brassica oleracea	89.44	0.00e+00	1499.00
IUUC-Bra-016891	Brassica rapa	89.07	0.00e+00	1493.00
IUUC-Cja-019291	Callithrix jacchus	25.57	1.00e-40	160.00
IUUC-Cre-022871	Chlamydomonas reinhardtii	33.06	9.00e-13	64.70
IUUC-Cin-025661	Ciona intestinalis	26.29	1.00e-25	110.00
IUUC-Csv-025929	Ciona savignyi	39.58	1.00e-09	55.80
IUUC-Cgl-026473	Colletotrichum gloeosporioides	24.03	2.00e-11	64.30
IUUC-Cne-026862	Cryptococcus neoformans	23.86	5.00e-25	109.00
IUUC-Cme-027187	Cyanidioschyzon merolae	33.33	2.00e-08	54.70
IUUC-Dre-028194	Danio rerio	26.72	3.00e-52	199.00
IUUC-Dor-030476	Dipodomys ordii	23.75	7.00e-22	98.60
IUUC-Dse-031561	Dothistroma septosporum	28.63	2.00e-16	81.30
IUUC-Ete-033185	Echinops telfairi	25.43	1.00e-40	160.00
IUUC-Eca-034192	Equus caballus	24.89	1.00e-41	164.00
IUUC-Eeu-034737	Erinaceus europaeus	27.78	3.00e-18	86.30
IUUC-Fal-037083	Ficedula albicollis	25.00	8.00e-36	144.00
IUUC-Fox-037801	Fusarium oxysporum	21.99	5.00e-14	72.80
IUUC-Fso-038117	Fusarium solani	20.87	1.00e-13	71.20
IUUC-Gmo-038612	Gadus morhua	26.25	9.00e-49	187.00
IUUC-Ggr-040067	Gaeumannomyces graminis	34.09	1.00e-11	65.10
IUUC-Gac-042628	Gasterosteus aculeatus	27.27	1.00e-52	200.00
IUUC-Gma-043929	Glycine max	56.29	0.00e+00	872.00
IUUC-Ggo-044723	Gorilla gorilla	25.07	7.00e-43	168.00
IUUC-Itr-048873	Ictidomys tridecemlineatus	25.30	4.00e-42	166.00
IUUC-Lch-049534	Latimeria chalumnae	25.04	3.00e-46	179.00
IUUC-Lpe-050961	Leersia perrieri	47.93	0.00e+00	756.00
IUUC-Loc-052545	Lepisosteus oculatus	26.20	6.00e-46	178.00
IUUC-Laf-053408	Loxodonta africana	24.93	4.00e-44	172.00
IUUC-Meu-056448	Macropus eugenii	27.89	2.00e-18	86.70
IUUC-Mor-057047	Magnaporthe oryzae	35.23	1.00e-11	65.10
IUUC-Mpo-057552	Magnaporthe poae	35.23	9.00e-12	65.50
IUUC-Mtr-058588	Medicago truncatula	56.33	0.00e+00	865.00
IUUC-Mla-059102	Melampsora laricipopulina	25.06	5.00e-17	82.80
IUUC-Mga-059364	Meleagris gallopavo	24.60	1.00e-36	147.00
IUUC-Mvi-060387	Microbotryum violaceum	28.03	2.00e-35	144.00
IUUC-Mmu-063820	Mus musculus	24.78	8.00e-42	164.00
IUUC-Mac-064657	Musa acuminata	49.82	0.00e+00	769.00
IUUC-Ncr-068881	Neurospora crassa	22.26	1.00e-16	82.00
IUUC-Opr-070788	Ochotona princeps	25.65	6.00e-34	138.00
IUUC-Ont-071934	Oreochromis niloticus	26.44	6.00e-53	201.00
IUUC-Oba-075556	Oryza barthii	49.09	0.00e+00	676.00
IUUC-Obr-076321	Oryza brachyantha	48.48	0.00e+00	759.00
IUUC-Ogl-077721	Oryza glaberrima	49.21	0.00e+00	774.00
IUUC-Ogu-078969	Oryza glumaepatula	48.90	0.00e+00	770.00
IUUC-Oin-079774	Oryza indica	49.21	0.00e+00	773.00
IUUC-Olo-080797	Oryza longistaminata	42.96	8.00e-156	543.00
IUUC-Ome-081288	Oryza meridionalis	48.96	0.00e+00	771.00
IUUC-Oni-082679	Oryza nivara	49.33	0.00e+00	774.00
IUUC-Opu-083382	Oryza punctata	48.24	0.00e+00	768.00
IUUC-Oru-085008	Oryza rufipogon	48.96	0.00e+00	770.00
IUUC-Osa-086286	Oryza sativa	49.08	0.00e+00	771.00
IUUC-Ola-087159	Oryzias latipes	26.65	9.00e-49	187.00
IUUC-Olu-087737	Ostreococcus lucimarinus	26.56	4.00e-63	235.00
IUUC-Oar-090087	Ovis aries	23.75	9.00e-43	168.00
IUUC-Pan-091703	Papio anubis	23.94	2.00e-39	157.00
IUUC-Psi-093289	Pelodiscus sinensis	25.31	9.00e-39	154.00
IUUC-Pma-094549	Petromyzon marinus	34.38	3.00e-21	96.30
IUUC-Ppa-095363	Physcomitrella patens	36.44	9.00e-136	477.00
IUUC-Pfo-096805	Poecilia formosa	26.04	4.00e-46	179.00
IUUC-Pop-099325	Populus trichocarpa	63.22	0.00e+00	1036.00
IUUC-Pca-100866	Procavia capensis	25.00	7.00e-35	142.00
IUUC-Ppe-101421	Prunus persica	62.18	0.00e+00	722.00
IUUC-Pgr-103514	Puccinia graminis	24.32	5.00e-13	69.70
IUUC-Pte-104266	Pyrenophora teres	23.08	3.00e-13	70.50
IUUC-Rno-105785	Rattus norvegicus	24.40	1.00e-41	164.00
IUUC-Sha-107623	Sarcophilus harrisii	24.35	2.00e-44	173.00
IUUC-Sja-107756	Schizosaccharomyces japonicus	32.54	2.00e-08	53.90
IUUC-Spo-108237	Schizosaccharomyces pombe	23.91	6.00e-16	79.00
IUUC-Smo-108802	Selaginella moellendorffii	34.73	2.00e-129	456.00
IUUC-Sit-110013	Setaria italica	47.70	0.00e+00	756.00
IUUC-Sly-111872	Solanum lycopersicum	55.39	0.00e+00	882.00
IUUC-Sar-113336	Sorex araneus	29.82	1.00e-08	55.10
IUUC-Sbi-114792	Sorghum bicolor	47.02	0.00e+00	740.00
IUUC-Sre-114923	Sporisorium reilianum	26.95	2.00e-50	193.00
IUUC-Ssc-115517	Sus scrofa	24.72	3.00e-43	169.00
IUUC-Tgu-116868	Taeniopygia guttata	23.87	2.00e-38	153.00
IUUC-Tru-118503	Takifugu rubripes	25.00	2.00e-41	164.00
IUUC-Tsy-119349	Tarsius syrichta	24.86	5.00e-44	172.00
IUUC-Tni-120437	Tetraodon nigroviridis	25.79	6.00e-44	172.00
IUUC-Tca-121127	Theobroma cacao	62.82	0.00e+00	1040.00
IUUC-Tae-123441	Triticum aestivum	48.20	0.00e+00	749.00
IUUC-Tme-127167	Tuber melanosporum	25.05	5.00e-21	96.30
IUUC-Ttr-128949	Tursiops truncatus	24.56	7.00e-38	151.00
IUUC-Uma-129522	Ustilago maydis	28.10	2.00e-53	204.00
IUUC-Vpa-130282	Vicugna pacos	24.32	1.00e-39	157.00
IUUC-Xtr-132078	Xenopus tropicalis	27.81	9.00e-40	158.00
IUUC-Xma-133958	Xiphophorus maculatus	25.47	3.00e-48	186.00
IUUC-Zma-135807	Zea mays	47.32	0.00e+00	742.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence