iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssl-108398

Ensembl Protein ID

EDO00222

UniProt Accession

A7ECP3; YTM1_SCLS1

Genbank Protein ID

EDO00222.1

Protein Name

Ribosome biogenesis protein ytm1

Genbank Nucleotide ID

CH476623

Gene Name

ytm1; SS1G_03082

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SS1G_03082	EDO00222	EDO00222

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-26	90.8	371	406

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtg 33
           gHt+ v+++ f  +d ++ lvs+++Dgt++vWDlr+ 
   Q: 371  GHTNFVSSI-FadPDsNYgLVSAGHDGTCRVWDLRST 406
           89999***9.***888999***************985 PP

Organism

Sclerotinia sclerotiorum

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MAQGQVQVYF TTTSPDIQLP EEKQQLLVPT NVRRYGLSQI LNSEAMLDTS SPIPFDFLIN 60
GTFLRTTLDE YLTANGLSSE TTLNLQYVRS LIPPLYEASF EHDDWVSSVD VYSGSSAVGI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGCAAG GGCAGGTGCA AGTATATTTT ACCACTACAT CTCCAGATAT CCAGTTACCA 60
GAGGAAAAGC AGCAATTGCT TGTTCCTACC AGTAAGTTTT AAGTTCAATT CAAATTTCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0051276--P:chromosome organization
GO:0000460--P:maturation of 5.8S rRNA
GO:0000470--P:maturation of LSU-rRNA

KEGG

ssl:SS1G_03082

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	28.60	3.00e-43	166.00
IUUC-Aml-001997	Ailuropoda melanoleuca	29.27	6.00e-35	139.00
IUUC-Atr-002544	Amborella trichopoda	27.60	8.00e-38	149.00
IUUC-Apl-003981	Anas platyrhynchos	30.08	4.00e-38	149.00
IUUC-Aca-004370	Anolis carolinensis	29.06	4.00e-42	163.00
IUUC-Aly-006455	Arabidopsis lyrata	27.42	9.00e-42	162.00
IUUC-Ath-006669	Arabidopsis thaliana	27.95	1.00e-38	151.00
IUUC-Ago-007864	Ashbya gossypii	41.56	1.00e-91	327.00
IUUC-Acl-008177	Aspergillus clavatus	56.69	2.00e-151	526.00
IUUC-Afl-008617	Aspergillus flavus	57.20	2.00e-147	513.00
IUUC-Afu-008752	Aspergillus fumigatus	56.18	3.00e-144	502.00
IUUC-Ani-009136	Aspergillus nidulans	57.23	3.00e-147	513.00
IUUC-Ang-009701	Aspergillus niger	56.68	2.00e-139	486.00
IUUC-Aor-009884	Aspergillus oryzae	57.41	7.00e-148	514.00
IUUC-Ate-010472	Aspergillus terreus	56.63	1.00e-94	337.00
IUUC-Ame-011432	Astyanax mexicanus	29.41	3.00e-43	167.00
IUUC-Bgr-012218	Blumeria graminis	63.30	3.00e-173	598.00
IUUC-Bta-012829	Bos taurus	29.02	2.00e-35	141.00
IUUC-Bci-013953	Botrytis cinerea	94.13	0.00e+00	900.00
IUUC-Bdi-014351	Brachypodium distachyon	28.93	6.00e-38	149.00
IUUC-Bol-016514	Brassica oleracea	28.42	2.00e-39	154.00
IUUC-Bra-016988	Brassica rapa	28.63	4.00e-40	156.00
IUUC-Cja-019468	Callithrix jacchus	28.50	8.00e-35	139.00
IUUC-Cfa-020471	Canis familiaris	29.02	5.00e-35	139.00
IUUC-Cpo-022260	Cavia porcellus	29.53	2.00e-34	137.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	31.37	2.00e-41	160.00
IUUC-Csa-023989	Chlorocebus sabaeus	29.25	1.00e-33	135.00
IUUC-Cin-025789	Ciona intestinalis	27.57	8.00e-30	122.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	55.67	2.00e-45	172.00
IUUC-Cne-027063	Cryptococcus neoformans	25.54	1.00e-27	115.00
IUUC-Dre-027907	Danio rerio	29.52	3.00e-43	167.00
IUUC-Dno-029225	Dasypus novemcinctus	28.33	1.00e-34	138.00
IUUC-Dor-031082	Dipodomys ordii	26.25	3.00e-25	107.00
IUUC-Dse-031308	Dothistroma septosporum	46.37	1.00e-114	404.00
IUUC-Dme-032189	Drosophila melanogaster	26.03	2.00e-32	130.00
IUUC-Ete-032247	Echinops telfairi	28.50	2.00e-31	127.00
IUUC-Eca-034285	Equus caballus	28.76	2.00e-34	137.00
IUUC-Fca-036114	Felis catus	29.67	5.00e-35	139.00
IUUC-Fox-037965	Fusarium oxysporum	56.54	5.00e-153	531.00
IUUC-Fso-038244	Fusarium solani	57.29	2.00e-149	520.00
IUUC-Gmo-039040	Gadus morhua	27.91	9.00e-41	158.00
IUUC-Ggr-040093	Gaeumannomyces graminis	52.48	4.00e-125	439.00
IUUC-Gga-040610	Gallus gallus	28.54	4.00e-37	146.00
IUUC-Gac-042117	Gasterosteus aculeatus	31.38	5.00e-42	162.00
IUUC-Gma-043756	Glycine max	31.08	4.00e-45	173.00
IUUC-Ggo-045179	Gorilla gorilla	28.26	3.00e-35	140.00
IUUC-Hsa-046114	Homo sapiens	29.53	2.00e-34	137.00
IUUC-Hvu-047331	Hordeum vulgare	28.10	2.00e-33	134.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	28.76	4.00e-35	139.00
IUUC-Kpa-049304	Komagataella pastoris	39.75	7.00e-96	342.00
IUUC-Lch-050655	Latimeria chalumnae	28.16	5.00e-31	125.00
IUUC-Lpe-051675	Leersia perrieri	29.11	3.00e-43	167.00
IUUC-Loc-052868	Lepisosteus oculatus	28.36	1.00e-40	158.00
IUUC-Lma-053258	Leptosphaeria maculans	48.95	1.00e-127	449.00
IUUC-Laf-053993	Loxodonta africana	28.90	2.00e-37	147.00
IUUC-Mcc-055128	Macaca mulatta	27.05	9.00e-24	102.00
IUUC-Mor-057114	Magnaporthe oryzae	60.47	3.00e-164	568.00
IUUC-Mpo-057463	Magnaporthe poae	60.11	2.00e-58	216.00
IUUC-Mtr-058367	Medicago truncatula	28.33	4.00e-37	146.00
IUUC-Mla-059107	Melampsora laricipopulina	27.00	2.00e-38	150.00
IUUC-Mga-059745	Meleagris gallopavo	29.53	2.00e-36	144.00
IUUC-Mvi-060362	Microbotryum violaceum	28.40	2.00e-38	151.00
IUUC-Mmu-063546	Mus musculus	28.19	7.00e-36	142.00
IUUC-Mac-065540	Musa acuminata	28.60	8.00e-42	162.00
IUUC-Mpu-066284	Mustela putorius furo	28.33	9.00e-36	142.00
IUUC-Mlu-067241	Myotis lucifugus	28.94	1.00e-35	141.00
IUUC-Nfi-068260	Neosartorya fischeri	57.23	9.00e-149	517.00
IUUC-Ncr-068719	Neurospora crassa	60.80	2.00e-156	543.00
IUUC-Nle-068981	Nomascus leucogenys	29.44	2.00e-34	137.00
IUUC-Opr-071218	Ochotona princeps	27.03	2.00e-34	137.00
IUUC-Ont-071646	Oreochromis niloticus	29.16	8.00e-38	149.00
IUUC-Oan-073453	Ornithorhynchus anatinus	28.54	7.00e-42	162.00
IUUC-Ocu-074008	Oryctolagus cuniculus	28.81	1.00e-36	144.00
IUUC-Oba-075712	Oryza barthii	25.99	9.00e-31	125.00
IUUC-Obr-076721	Oryza brachyantha	28.90	2.00e-43	167.00
IUUC-Ogl-077229	Oryza glaberrima	29.05	1.00e-43	168.00
IUUC-Ogu-078977	Oryza glumaepatula	26.20	3.00e-31	127.00
IUUC-Oin-079683	Oryza indica	29.25	5.00e-44	169.00
IUUC-Olo-080291	Oryza longistaminata	29.32	4.00e-24	102.00
IUUC-Ome-081834	Oryza meridionalis	29.46	6.00e-44	169.00
IUUC-Oni-082507	Oryza nivara	27.80	6.00e-38	149.00
IUUC-Opu-083396	Oryza punctata	28.42	1.00e-41	161.00
IUUC-Oru-085220	Oryza rufipogon	27.80	8.00e-38	149.00
IUUC-Osa-085767	Oryza sativa	29.25	5.00e-44	169.00
IUUC-Ola-087420	Oryzias latipes	29.84	7.00e-43	166.00
IUUC-Olu-087740	Ostreococcus lucimarinus	25.83	8.00e-29	119.00
IUUC-Oga-088264	Otolemur garnettii	28.50	3.00e-34	136.00
IUUC-Oar-089335	Ovis aries	29.02	2.00e-35	140.00
IUUC-Ptr-091320	Pan troglodytes	29.53	2.00e-34	137.00
IUUC-Pan-092833	Papio anubis	28.97	6.00e-34	136.00
IUUC-Psi-093504	Pelodiscus sinensis	29.79	7.00e-37	145.00
IUUC-Pma-094189	Petromyzon marinus	28.80	7.00e-37	145.00
IUUC-Pno-094929	Phaeosphaeria nodorum	49.37	2.00e-125	440.00
IUUC-Ppa-095429	Physcomitrella patens	29.71	1.00e-48	185.00
IUUC-Pfo-096337	Poecilia formosa	29.20	3.00e-43	166.00
IUUC-Pab-097571	Pongo abelii	29.53	2.00e-34	137.00
IUUC-Pop-099977	Populus trichocarpa	27.63	6.00e-43	166.00
IUUC-Pca-100394	Procavia capensis	28.11	8.00e-31	125.00
IUUC-Ppe-101848	Prunus persica	31.46	4.00e-42	163.00
IUUC-Pva-102921	Pteropus vampyrus	31.22	2.00e-19	88.20
IUUC-Pgr-103637	Puccinia graminis	26.91	1.00e-45	175.00
IUUC-Ptt-103781	Puccinia triticina	26.75	7.00e-45	172.00
IUUC-Pte-104135	Pyrenophora teres	48.77	2.00e-117	415.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	48.00	2.00e-121	426.00
IUUC-Rno-105114	Rattus norvegicus	28.37	5.00e-36	142.00
IUUC-Sce-106401	Saccharomyces cerevisiae	39.48	2.00e-89	320.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	38.03	7.00e-82	295.00
IUUC-Spo-108134	Schizosaccharomyces pombe	37.76	1.00e-79	287.00
IUUC-Smo-108720	Selaginella moellendorffii	28.71	3.00e-36	143.00
IUUC-Sit-110354	Setaria italica	28.10	2.00e-42	164.00
IUUC-Sly-111178	Solanum lycopersicum	30.17	9.00e-46	175.00
IUUC-Stu-112778	Solanum tuberosum	30.40	5.00e-43	166.00
IUUC-Sbi-114193	Sorghum bicolor	27.95	3.00e-40	157.00
IUUC-Sre-115002	Sporisorium reilianum	27.90	7.00e-29	119.00
IUUC-Ssc-116066	Sus scrofa	29.27	9.00e-36	142.00
IUUC-Tgu-117048	Taeniopygia guttata	29.25	1.00e-36	145.00
IUUC-Tni-119820	Tetraodon nigroviridis	29.88	2.00e-38	150.00
IUUC-Tca-121605	Theobroma cacao	28.61	1.00e-44	171.00
IUUC-Tre-121947	Trichoderma reesei	55.91	2.00e-150	523.00
IUUC-Tvi-122481	Trichoderma virens	55.81	2.00e-150	523.00
IUUC-Tae-125861	Triticum aestivum	28.78	6.00e-43	166.00
IUUC-Tur-126586	Triticum urartu	28.10	9.00e-39	152.00
IUUC-Tme-126900	Tuber melanosporum	43.71	2.00e-107	380.00
IUUC-Uma-129628	Ustilago maydis	26.42	2.00e-23	102.00
IUUC-Vpa-130260	Vicugna pacos	28.61	5.00e-35	139.00
IUUC-Vvi-131009	Vitis vinifera	31.26	3.00e-47	180.00
IUUC-Xtr-132083	Xenopus tropicalis	28.81	2.00e-39	154.00
IUUC-Xma-133094	Xiphophorus maculatus	29.72	1.00e-43	167.00
IUUC-Yli-134531	Yarrowia lipolytica	34.44	3.00e-68	250.00
IUUC-Zma-135509	Zea mays	28.31	8.00e-42	162.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence